miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23823 3' -56.1 NC_005261.1 + 1177 0.67 0.828743
Target:  5'- cCCGCgCCGCGGcc---GggGCCgggGCCGg -3'
miRNA:   3'- -GGCG-GGCGCCuauuuCuaCGGa--CGGU- -5'
23823 3' -56.1 NC_005261.1 + 1262 0.72 0.583836
Target:  5'- gUGCCCGgGGGUGAcuGUGCCggcGCCc -3'
miRNA:   3'- gGCGGGCgCCUAUUucUACGGa--CGGu -5'
23823 3' -56.1 NC_005261.1 + 2407 0.66 0.875962
Target:  5'- gCGCCCGCGGGccccgcgcGGcgGCggGCCGc -3'
miRNA:   3'- gGCGGGCGCCUauu-----UCuaCGgaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 2796 0.72 0.563498
Target:  5'- gCCGCCgGCGGccgGGAGggGCCgggcgGCCc -3'
miRNA:   3'- -GGCGGgCGCCua-UUUCuaCGGa----CGGu -5'
23823 3' -56.1 NC_005261.1 + 3300 0.67 0.844474
Target:  5'- uCCGCCCGCGG-------UGCCccgGCCc -3'
miRNA:   3'- -GGCGGGCGCCuauuucuACGGa--CGGu -5'
23823 3' -56.1 NC_005261.1 + 3408 0.72 0.553399
Target:  5'- uCCGCCgGCGGGcUGAAGAgcgcGCggGCCAg -3'
miRNA:   3'- -GGCGGgCGCCU-AUUUCUa---CGgaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 4944 0.66 0.896681
Target:  5'- cCCGCgCCGCGGccc-AGgcGCCcccgGCCGc -3'
miRNA:   3'- -GGCG-GGCGCCuauuUCuaCGGa---CGGU- -5'
23823 3' -56.1 NC_005261.1 + 6239 0.71 0.624877
Target:  5'- gCGCCCGgGGAgg-----GCCUGCCc -3'
miRNA:   3'- gGCGGGCgCCUauuucuaCGGACGGu -5'
23823 3' -56.1 NC_005261.1 + 6257 0.69 0.756021
Target:  5'- nCCGcCCCGCGG----GGcgGCCcGCCGc -3'
miRNA:   3'- -GGC-GGGCGCCuauuUCuaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 8563 0.68 0.8017
Target:  5'- gCCGCCC-CGGGaagUGAGGAcGCUggcagaaUGCCAg -3'
miRNA:   3'- -GGCGGGcGCCU---AUUUCUaCGG-------ACGGU- -5'
23823 3' -56.1 NC_005261.1 + 9844 0.66 0.878842
Target:  5'- cCCGCCCGgGGc--AAGcccgccccagccgGCCUGCCc -3'
miRNA:   3'- -GGCGGGCgCCuauUUCua-----------CGGACGGu -5'
23823 3' -56.1 NC_005261.1 + 9901 0.66 0.878842
Target:  5'- cCCGCCCGgGGc--AAGcccgccccagccgGCCUGCCc -3'
miRNA:   3'- -GGCGGGCgCCuauUUCua-----------CGGACGGu -5'
23823 3' -56.1 NC_005261.1 + 14224 0.69 0.746337
Target:  5'- aCGCgCGCGG-UGAAGAccgcGCCgGCCGg -3'
miRNA:   3'- gGCGgGCGCCuAUUUCUa---CGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 14816 0.67 0.845283
Target:  5'- aCGUCCGCGGcuUAuAGAUGC--GCCGg -3'
miRNA:   3'- gGCGGGCGCCu-AUuUCUACGgaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 15186 0.67 0.837108
Target:  5'- gCGCCCGCGGG-AAAc--GCC-GCCAu -3'
miRNA:   3'- gGCGGGCGCCUaUUUcuaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 15649 0.71 0.649575
Target:  5'- gCCGCCCGgcCGGGagcuggugcuccagGAAGAUcaGCCUGCCc -3'
miRNA:   3'- -GGCGGGC--GCCUa-------------UUUCUA--CGGACGGu -5'
23823 3' -56.1 NC_005261.1 + 16776 0.67 0.820198
Target:  5'- gUCGUCCGUgGGGUAGGcGAaGCCcGCCAg -3'
miRNA:   3'- -GGCGGGCG-CCUAUUU-CUaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 18276 0.67 0.86104
Target:  5'- gCUGCCCGCGu----AGAUGUCguugggGCCGu -3'
miRNA:   3'- -GGCGGGCGCcuauuUCUACGGa-----CGGU- -5'
23823 3' -56.1 NC_005261.1 + 20346 0.66 0.896681
Target:  5'- aCGCCCGCGGcu---GccGCgaGCCGu -3'
miRNA:   3'- gGCGGGCGCCuauuuCuaCGgaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 23707 0.69 0.736551
Target:  5'- cCCGCCCGguCGGGUGGcaagcGGGUGgCCgcGCCGa -3'
miRNA:   3'- -GGCGGGC--GCCUAUU-----UCUAC-GGa-CGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.