miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23825 3' -64.1 NC_005261.1 + 104609 0.66 0.563486
Target:  5'- -gCCGCGCGUacgcguccaGCCCCUcgagCaCCaUCCCGGa -3'
miRNA:   3'- ggGGUGCGCG---------CGGGGAa---G-GG-AGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 100072 0.66 0.572999
Target:  5'- gCCCGgggGCGCGCCgCgcCCCUCgCCGc -3'
miRNA:   3'- gGGGUg--CGCGCGGgGaaGGGAG-GGCu -5'
23825 3' -64.1 NC_005261.1 + 119855 0.66 0.563486
Target:  5'- gCCCCugacCGUGCGCuCCCUgaccgCCgCagCCGAg -3'
miRNA:   3'- -GGGGu---GCGCGCG-GGGAa----GG-GagGGCU- -5'
23825 3' -64.1 NC_005261.1 + 32704 0.66 0.554015
Target:  5'- gCCCACcCGC-CCCCcgCCC-CCCGc -3'
miRNA:   3'- gGGGUGcGCGcGGGGaaGGGaGGGCu -5'
23825 3' -64.1 NC_005261.1 + 64138 0.66 0.535223
Target:  5'- gCCgCCA-GCGCGUCCUggCCCagCCCGc -3'
miRNA:   3'- -GG-GGUgCGCGCGGGGaaGGGa-GGGCu -5'
23825 3' -64.1 NC_005261.1 + 28431 0.66 0.544593
Target:  5'- aCCCGCGCGCaCCgCggCCggccauggcguCUCCCGGc -3'
miRNA:   3'- gGGGUGCGCGcGGgGaaGG-----------GAGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 117205 0.66 0.563486
Target:  5'- cUCCUACcgGCGCGCCCgCUgCCUgggCgCCGAg -3'
miRNA:   3'- -GGGGUG--CGCGCGGG-GAaGGGa--G-GGCU- -5'
23825 3' -64.1 NC_005261.1 + 82371 0.66 0.554015
Target:  5'- gCgCGCGCGCGCCgCCagcgccgCCCagCCCGc -3'
miRNA:   3'- gGgGUGCGCGCGG-GGaa-----GGGa-GGGCu -5'
23825 3' -64.1 NC_005261.1 + 57365 0.66 0.535223
Target:  5'- uCCCCGCGCG-GCCCgacgCCCgccagcagCUCGGg -3'
miRNA:   3'- -GGGGUGCGCgCGGGgaa-GGGa-------GGGCU- -5'
23825 3' -64.1 NC_005261.1 + 60398 0.66 0.544593
Target:  5'- cCUCCAUG-GCGCCgggCCggCCCgggCCCGGg -3'
miRNA:   3'- -GGGGUGCgCGCGG---GGaaGGGa--GGGCU- -5'
23825 3' -64.1 NC_005261.1 + 134709 0.66 0.52591
Target:  5'- -aCCGCgGCGCGCCCagaCCCggCCGGg -3'
miRNA:   3'- ggGGUG-CGCGCGGGgaaGGGagGGCU- -5'
23825 3' -64.1 NC_005261.1 + 127118 0.66 0.554015
Target:  5'- aCCCgcgauuuuuauGCGCGCGCCCg--CCCgCCCc- -3'
miRNA:   3'- gGGG-----------UGCGCGCGGGgaaGGGaGGGcu -5'
23825 3' -64.1 NC_005261.1 + 91880 0.66 0.544593
Target:  5'- gUCCguCGCGCucuguugucuGCCCCcgCCCccgUCCCGGc -3'
miRNA:   3'- -GGGguGCGCG----------CGGGGaaGGG---AGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 15125 0.66 0.563486
Target:  5'- aUCCgGCGuCGCGaCUCCUUCgCC-CCCGc -3'
miRNA:   3'- -GGGgUGC-GCGC-GGGGAAG-GGaGGGCu -5'
23825 3' -64.1 NC_005261.1 + 107874 0.66 0.535223
Target:  5'- gCCCGCGCgcucGCGCCCgCggCCCgcuugUCCGc -3'
miRNA:   3'- gGGGUGCG----CGCGGG-GaaGGGa----GGGCu -5'
23825 3' -64.1 NC_005261.1 + 59513 0.66 0.52591
Target:  5'- gUCgCACGCGCGCCCUggagcagCCC-CgCCGc -3'
miRNA:   3'- -GGgGUGCGCGCGGGGaa-----GGGaG-GGCu -5'
23825 3' -64.1 NC_005261.1 + 36872 0.66 0.544593
Target:  5'- gCCCCGCaCGCuGgCCCgcgCCCUUCCu- -3'
miRNA:   3'- -GGGGUGcGCG-CgGGGaa-GGGAGGGcu -5'
23825 3' -64.1 NC_005261.1 + 11539 0.66 0.538964
Target:  5'- aCCCCGCGUugggcgaaaaaaGaaggggguucugccaUGCCCCUUCCCcCCCc- -3'
miRNA:   3'- -GGGGUGCG------------C---------------GCGGGGAAGGGaGGGcu -5'
23825 3' -64.1 NC_005261.1 + 4943 0.66 0.535223
Target:  5'- gCCCGCGcCGCGgCCCaggCgCC-CCCGGc -3'
miRNA:   3'- gGGGUGC-GCGCgGGGaa-G-GGaGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 29310 0.66 0.544593
Target:  5'- gCCCgGCaGCGCGCCgCCg--CCgCCCGGc -3'
miRNA:   3'- -GGGgUG-CGCGCGG-GGaagGGaGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.