miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23825 3' -64.1 NC_005261.1 + 100072 0.66 0.572999
Target:  5'- gCCCGgggGCGCGCCgCgcCCCUCgCCGc -3'
miRNA:   3'- gGGGUg--CGCGCGGgGaaGGGAG-GGCu -5'
23825 3' -64.1 NC_005261.1 + 35924 0.75 0.173262
Target:  5'- gCCCCGCGCcgcagcccagcggGCGCCCaggCCCgagCCCGGc -3'
miRNA:   3'- -GGGGUGCG-------------CGCGGGgaaGGGa--GGGCU- -5'
23825 3' -64.1 NC_005261.1 + 24899 0.74 0.176591
Target:  5'- gCCCgGCGgGCGCCCCUUcaagCCCUCggcggcugcagccgCCGAg -3'
miRNA:   3'- -GGGgUGCgCGCGGGGAA----GGGAG--------------GGCU- -5'
23825 3' -64.1 NC_005261.1 + 101594 0.74 0.177432
Target:  5'- cCUCCGCGCGCGCCgCCUUUgccgccucuagcgCCUCUCGc -3'
miRNA:   3'- -GGGGUGCGCGCGG-GGAAG-------------GGAGGGCu -5'
23825 3' -64.1 NC_005261.1 + 10958 0.73 0.204848
Target:  5'- cCCCCagACGCGUgggccGCCCCgcCCCgcgCCCGAc -3'
miRNA:   3'- -GGGG--UGCGCG-----CGGGGaaGGGa--GGGCU- -5'
23825 3' -64.1 NC_005261.1 + 33651 0.73 0.209678
Target:  5'- cCCCCGCGCGCGCCgauuUCggCCCcCCCc- -3'
miRNA:   3'- -GGGGUGCGCGCGG----GGaaGGGaGGGcu -5'
23825 3' -64.1 NC_005261.1 + 132430 0.73 0.216604
Target:  5'- cCCCUgcuucuuuuacaagaGCGCGUGCCCCUcggccgCCCUCCgCGc -3'
miRNA:   3'- -GGGG---------------UGCGCGCGGGGAa-----GGGAGG-GCu -5'
23825 3' -64.1 NC_005261.1 + 13054 0.73 0.219632
Target:  5'- -gCCGCGCGCGCCCCUgccgggcgcgUCCgccggCCCGu -3'
miRNA:   3'- ggGGUGCGCGCGGGGAa---------GGGa----GGGCu -5'
23825 3' -64.1 NC_005261.1 + 33200 0.73 0.235319
Target:  5'- gCCCGCcCGCGCCCUcccccccucUCCCUCCCc- -3'
miRNA:   3'- gGGGUGcGCGCGGGGa--------AGGGAGGGcu -5'
23825 3' -64.1 NC_005261.1 + 35469 0.75 0.157822
Target:  5'- gCgCGCGCGCGUCCCggggUCCCUgCCGc -3'
miRNA:   3'- gGgGUGCGCGCGGGGa---AGGGAgGGCu -5'
23825 3' -64.1 NC_005261.1 + 11892 0.76 0.143287
Target:  5'- gCCCgCACGCGCGCCCgCcgcgggCCCggCCCGGc -3'
miRNA:   3'- -GGG-GUGCGCGCGGG-Gaa----GGGa-GGGCU- -5'
23825 3' -64.1 NC_005261.1 + 137574 0.76 0.136156
Target:  5'- gCCCCGCcaccuaaGCGCGCCCCUcCCCcacCCCGc -3'
miRNA:   3'- -GGGGUG-------CGCGCGGGGAaGGGa--GGGCu -5'
23825 3' -64.1 NC_005261.1 + 94990 0.83 0.04759
Target:  5'- gCCCCGCGCGCGCCCCg-CCCUgCgGGg -3'
miRNA:   3'- -GGGGUGCGCGCGGGGaaGGGAgGgCU- -5'
23825 3' -64.1 NC_005261.1 + 39553 0.82 0.049705
Target:  5'- gCCCCGCGCGCGCgcggcggucuguccCCCUcUCCCUCCCc- -3'
miRNA:   3'- -GGGGUGCGCGCG--------------GGGA-AGGGAGGGcu -5'
23825 3' -64.1 NC_005261.1 + 22323 0.79 0.083174
Target:  5'- uCCCCGCGCcCGCCCacacUCCCUCCCu- -3'
miRNA:   3'- -GGGGUGCGcGCGGGga--AGGGAGGGcu -5'
23825 3' -64.1 NC_005261.1 + 105919 0.79 0.09194
Target:  5'- gCUCGCGCGCGCCCaCgccgcgCCCUCCgCGAg -3'
miRNA:   3'- gGGGUGCGCGCGGG-Gaa----GGGAGG-GCU- -5'
23825 3' -64.1 NC_005261.1 + 92558 0.78 0.109424
Target:  5'- gUCCCGCGCGCGCCCCgcgCgCCgcgcgCCCa- -3'
miRNA:   3'- -GGGGUGCGCGCGGGGaa-G-GGa----GGGcu -5'
23825 3' -64.1 NC_005261.1 + 11633 0.77 0.114966
Target:  5'- cCCCCACGCgGCGCCCCcucgagCCCcgCCgGAg -3'
miRNA:   3'- -GGGGUGCG-CGCGGGGaa----GGGa-GGgCU- -5'
23825 3' -64.1 NC_005261.1 + 129283 0.77 0.114966
Target:  5'- cCCCCGCGC-CGCCCCg-CCCgccCCCGGc -3'
miRNA:   3'- -GGGGUGCGcGCGGGGaaGGGa--GGGCU- -5'
23825 3' -64.1 NC_005261.1 + 48629 0.77 0.120769
Target:  5'- gCCCCACGCccCGCCCCUgcgccggCCCccgCCCGGa -3'
miRNA:   3'- -GGGGUGCGc-GCGGGGAa------GGGa--GGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.