miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23825 3' -64.1 NC_005261.1 + 562 0.68 0.411798
Target:  5'- gCCgCCGCGCGgugacacuaCGCUCCUcccCCCUCCCc- -3'
miRNA:   3'- -GG-GGUGCGC---------GCGGGGAa--GGGAGGGcu -5'
23825 3' -64.1 NC_005261.1 + 661 0.68 0.453961
Target:  5'- uCCCCG-GCGCcgaGUCCUggCCCUCCgCGGa -3'
miRNA:   3'- -GGGGUgCGCG---CGGGGaaGGGAGG-GCU- -5'
23825 3' -64.1 NC_005261.1 + 732 0.69 0.379866
Target:  5'- cCCCCuccucCGCG-GUCCCUcCUCUCCCGc -3'
miRNA:   3'- -GGGGu----GCGCgCGGGGAaGGGAGGGCu -5'
23825 3' -64.1 NC_005261.1 + 810 1.09 0.000564
Target:  5'- cCCCCACGCGCGCCCCUUCCCUCCCGAu -3'
miRNA:   3'- -GGGGUGCGCGCGGGGAAGGGAGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 1162 0.67 0.516659
Target:  5'- uUCCACGCGCGCCgg--CCCgcgCCgCGGc -3'
miRNA:   3'- gGGGUGCGCGCGGggaaGGGa--GG-GCU- -5'
23825 3' -64.1 NC_005261.1 + 2707 0.67 0.471472
Target:  5'- gCCgGCGcCGgGCCCCUggcCCCggCCGAc -3'
miRNA:   3'- gGGgUGC-GCgCGGGGAa--GGGagGGCU- -5'
23825 3' -64.1 NC_005261.1 + 3018 0.67 0.498359
Target:  5'- cUCCCGCGgGCcuCCCCgUCCCcgUCCCc- -3'
miRNA:   3'- -GGGGUGCgCGc-GGGGaAGGG--AGGGcu -5'
23825 3' -64.1 NC_005261.1 + 3303 0.67 0.516659
Target:  5'- gCCCGCG-GUGCCCCggCCCgcaugUCCu- -3'
miRNA:   3'- gGGGUGCgCGCGGGGaaGGGa----GGGcu -5'
23825 3' -64.1 NC_005261.1 + 4498 0.68 0.420037
Target:  5'- gCCUGCGCGgGCCCCagUCgCgcgCCCGc -3'
miRNA:   3'- gGGGUGCGCgCGGGGa-AGgGa--GGGCu -5'
23825 3' -64.1 NC_005261.1 + 4943 0.66 0.535223
Target:  5'- gCCCGCGcCGCGgCCCaggCgCC-CCCGGc -3'
miRNA:   3'- gGGGUGC-GCGCgGGGaa-G-GGaGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 5980 0.68 0.428375
Target:  5'- uCCUCugcCGCGCGUCuCCgcUCCUCCCGc -3'
miRNA:   3'- -GGGGu--GCGCGCGG-GGaaGGGAGGGCu -5'
23825 3' -64.1 NC_005261.1 + 6407 0.7 0.357029
Target:  5'- aCCCGCGCGCGUuggCCCggCCUgcUCgCGAg -3'
miRNA:   3'- gGGGUGCGCGCG---GGGaaGGG--AGgGCU- -5'
23825 3' -64.1 NC_005261.1 + 6481 0.72 0.257684
Target:  5'- aCCCCAgGCGCcucCCCCUUcaCCCUUCCc- -3'
miRNA:   3'- -GGGGUgCGCGc--GGGGAA--GGGAGGGcu -5'
23825 3' -64.1 NC_005261.1 + 6848 0.66 0.572999
Target:  5'- aCCCACcCcCGCCCCaUUCaCgCUCCCGu -3'
miRNA:   3'- gGGGUGcGcGCGGGG-AAG-G-GAGGGCu -5'
23825 3' -64.1 NC_005261.1 + 9686 0.68 0.411798
Target:  5'- gCCCACccgaacccCGCGCUCCgccCCCUCCCc- -3'
miRNA:   3'- gGGGUGc-------GCGCGGGGaa-GGGAGGGcu -5'
23825 3' -64.1 NC_005261.1 + 10526 0.71 0.307581
Target:  5'- gCCCCGCgGCGCGCUCgCUgUCgCC-CCCGGc -3'
miRNA:   3'- -GGGGUG-CGCGCGGG-GA-AG-GGaGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 10958 0.73 0.204848
Target:  5'- cCCCCagACGCGUgggccGCCCCgcCCCgcgCCCGAc -3'
miRNA:   3'- -GGGG--UGCGCG-----CGGGGaaGGGa--GGGCU- -5'
23825 3' -64.1 NC_005261.1 + 11164 0.69 0.387692
Target:  5'- uCCCCGuaucucgcCGCG-GCCCCggCCCUCCg-- -3'
miRNA:   3'- -GGGGU--------GCGCgCGGGGaaGGGAGGgcu -5'
23825 3' -64.1 NC_005261.1 + 11230 0.71 0.281757
Target:  5'- cCCCCGCGgGCGCgCU--UCCUCCuCGAu -3'
miRNA:   3'- -GGGGUGCgCGCGgGGaaGGGAGG-GCU- -5'
23825 3' -64.1 NC_005261.1 + 11539 0.66 0.538964
Target:  5'- aCCCCGCGUugggcgaaaaaaGaaggggguucugccaUGCCCCUUCCCcCCCc- -3'
miRNA:   3'- -GGGGUGCG------------C---------------GCGGGGAAGGGaGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.