miRNA display CGI


Results 1 - 20 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23826 5' -60 NC_005261.1 + 62538 0.66 0.686811
Target:  5'- gCAUGGgccCCACGCcgagaGGcGCCGCCAgCaUGCg -3'
miRNA:   3'- aGUACC---GGUGCG-----UC-CGGCGGU-GcACG- -5'
23826 5' -60 NC_005261.1 + 10905 0.66 0.686811
Target:  5'- ---cGGCgGCgGCAGcGCCGCCGcCGgccGCg -3'
miRNA:   3'- aguaCCGgUG-CGUC-CGGCGGU-GCa--CG- -5'
23826 5' -60 NC_005261.1 + 114279 0.66 0.686811
Target:  5'- -gGUGGCgCGCGCGGGCuacguggaggaCGCCuuGaGCg -3'
miRNA:   3'- agUACCG-GUGCGUCCG-----------GCGGugCaCG- -5'
23826 5' -60 NC_005261.1 + 40237 0.66 0.686811
Target:  5'- cUC-UGGCC-CGgGGGCCgugagcGCCAUGgcgGCg -3'
miRNA:   3'- -AGuACCGGuGCgUCCGG------CGGUGCa--CG- -5'
23826 5' -60 NC_005261.1 + 28572 0.66 0.686811
Target:  5'- gCcgGGCCgagGCGCgcgagcgccggcGGGCCGCC-CGcGCc -3'
miRNA:   3'- aGuaCCGG---UGCG------------UCCGGCGGuGCaCG- -5'
23826 5' -60 NC_005261.1 + 51671 0.66 0.694749
Target:  5'- -aGUGGCCGCGagcugcaucgcGGUCGCCGCGc-- -3'
miRNA:   3'- agUACCGGUGCgu---------CCGGCGGUGCacg -5'
23826 5' -60 NC_005261.1 + 112688 0.66 0.735793
Target:  5'- ---gGGCUggGCGUcgAGGCCguGCC-CGUGCa -3'
miRNA:   3'- aguaCCGG--UGCG--UCCGG--CGGuGCACG- -5'
23826 5' -60 NC_005261.1 + 117914 0.66 0.690784
Target:  5'- ---cGGCUGCGCGGgaacgaaggccggcuGCgGCC-CGUGCg -3'
miRNA:   3'- aguaCCGGUGCGUC---------------CGgCGGuGCACG- -5'
23826 5' -60 NC_005261.1 + 51373 0.66 0.686811
Target:  5'- ---cGGaguaCGCGCAGGCCGugcgcgaacuCCGCGaGCg -3'
miRNA:   3'- aguaCCg---GUGCGUCCGGC----------GGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 75968 0.66 0.690784
Target:  5'- ---aGGUCACGCAgcucuucccgggcgcGGCCGCCcuCGcGCu -3'
miRNA:   3'- aguaCCGGUGCGU---------------CCGGCGGu-GCaCG- -5'
23826 5' -60 NC_005261.1 + 100796 0.66 0.695739
Target:  5'- ---aGGCCA-GCAGGUCccggaagGgCGCGUGCg -3'
miRNA:   3'- aguaCCGGUgCGUCCGG-------CgGUGCACG- -5'
23826 5' -60 NC_005261.1 + 74722 0.66 0.683826
Target:  5'- aCcgGGCCGCgGCAgcGGCCGCggacaaccugcuggCGCG-GCa -3'
miRNA:   3'- aGuaCCGGUG-CGU--CCGGCG--------------GUGCaCG- -5'
23826 5' -60 NC_005261.1 + 27452 0.66 0.686811
Target:  5'- --uUGGCg--GCGGGCCGCCccGCGggGCg -3'
miRNA:   3'- aguACCGgugCGUCCGGCGG--UGCa-CG- -5'
23826 5' -60 NC_005261.1 + 91419 0.66 0.686811
Target:  5'- aCGUGGa-GCGCGacGCCGCCGCG-GUg -3'
miRNA:   3'- aGUACCggUGCGUc-CGGCGGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 119539 0.66 0.686811
Target:  5'- ---cGGCCGaGCaAGGCCccGCCGCGggGCc -3'
miRNA:   3'- aguaCCGGUgCG-UCCGG--CGGUGCa-CG- -5'
23826 5' -60 NC_005261.1 + 3517 0.66 0.695739
Target:  5'- ---cGGCCgccuccaGCGCGgcGGCCGCCuCG-GCg -3'
miRNA:   3'- aguaCCGG-------UGCGU--CCGGCGGuGCaCG- -5'
23826 5' -60 NC_005261.1 + 104720 0.66 0.686811
Target:  5'- ---cGGCCGa--GGGCgcgucgUGCCGCGUGCg -3'
miRNA:   3'- aguaCCGGUgcgUCCG------GCGGUGCACG- -5'
23826 5' -60 NC_005261.1 + 81435 0.66 0.686811
Target:  5'- gUCGUcGGCCGCcccgcgGCGGG-CGCCGCcaGCa -3'
miRNA:   3'- -AGUA-CCGGUG------CGUCCgGCGGUGcaCG- -5'
23826 5' -60 NC_005261.1 + 128247 0.66 0.693758
Target:  5'- cUCAUGaGCCGgaaGCAGaGCCuguaugcguacaagGCCACG-GCa -3'
miRNA:   3'- -AGUAC-CGGUg--CGUC-CGG--------------CGGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 38167 0.66 0.686811
Target:  5'- ---cGGCCGCaGCAcGGCUGCCugGn-- -3'
miRNA:   3'- aguaCCGGUG-CGU-CCGGCGGugCacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.