miRNA display CGI


Results 1 - 20 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23826 5' -60 NC_005261.1 + 196 0.71 0.408655
Target:  5'- cCggGGCCA-GCGGuGCCGCCGCcgccccugGUGCu -3'
miRNA:   3'- aGuaCCGGUgCGUC-CGGCGGUG--------CACG- -5'
23826 5' -60 NC_005261.1 + 374 0.73 0.329463
Target:  5'- -gGUGGCgGCGguGGCgGCgGCGgcgGCg -3'
miRNA:   3'- agUACCGgUGCguCCGgCGgUGCa--CG- -5'
23826 5' -60 NC_005261.1 + 1318 0.66 0.7164
Target:  5'- ---cGGCaCGCGCuccgggacGCCGCCGCGccGCg -3'
miRNA:   3'- aguaCCG-GUGCGuc------CGGCGGUGCa-CG- -5'
23826 5' -60 NC_005261.1 + 1389 0.76 0.216767
Target:  5'- ---aGGCCACGCcGGgCGCCGCGgccGCg -3'
miRNA:   3'- aguaCCGGUGCGuCCgGCGGUGCa--CG- -5'
23826 5' -60 NC_005261.1 + 1482 0.75 0.25611
Target:  5'- ---cGGCCGCGCAGaaggccaCCGCCGCGgccgGCa -3'
miRNA:   3'- aguaCCGGUGCGUCc------GGCGGUGCa---CG- -5'
23826 5' -60 NC_005261.1 + 1758 0.68 0.575587
Target:  5'- gCGUGGCCACcguGUAGcGCacguuggCGCCGCG-GCa -3'
miRNA:   3'- aGUACCGGUG---CGUC-CG-------GCGGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 1912 0.68 0.566653
Target:  5'- cUCA-GGCCAgCGCGcGGCgcacugCGCCGCGgGCa -3'
miRNA:   3'- -AGUaCCGGU-GCGU-CCG------GCGGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 1953 0.66 0.706595
Target:  5'- ---cGG-CGCGCAGGUa--CACGUGCg -3'
miRNA:   3'- aguaCCgGUGCGUCCGgcgGUGCACG- -5'
23826 5' -60 NC_005261.1 + 2051 0.69 0.521638
Target:  5'- ---cGGCCAgcCGCAGGCagagguacucgaccgCGCCGCGgaagGCc -3'
miRNA:   3'- aguaCCGGU--GCGUCCG---------------GCGGUGCa---CG- -5'
23826 5' -60 NC_005261.1 + 2250 0.71 0.400216
Target:  5'- ---cGGCCACuCAGGCCGCCG-GcGCu -3'
miRNA:   3'- aguaCCGGUGcGUCCGGCGGUgCaCG- -5'
23826 5' -60 NC_005261.1 + 2369 0.7 0.452459
Target:  5'- ---aGGCCACGC--GCCGCCGCagcgGCg -3'
miRNA:   3'- aguaCCGGUGCGucCGGCGGUGca--CG- -5'
23826 5' -60 NC_005261.1 + 2406 0.67 0.636729
Target:  5'- ---cGcGCC-CGCGGGCC-CCGCGcgGCg -3'
miRNA:   3'- aguaC-CGGuGCGUCCGGcGGUGCa-CG- -5'
23826 5' -60 NC_005261.1 + 2526 0.72 0.391889
Target:  5'- cUCggGGCgGCaGUAGGCCGCCAgCGccGCg -3'
miRNA:   3'- -AGuaCCGgUG-CGUCCGGCGGU-GCa-CG- -5'
23826 5' -60 NC_005261.1 + 2608 0.68 0.606573
Target:  5'- cCGUcGGCgGCG-GGGCCGCCGgGcgGCa -3'
miRNA:   3'- aGUA-CCGgUGCgUCCGGCGGUgCa-CG- -5'
23826 5' -60 NC_005261.1 + 2743 0.76 0.216767
Target:  5'- --uUGcGCCGCgGCGGGCCGUCGCG-GCg -3'
miRNA:   3'- aguAC-CGGUG-CGUCCGGCGGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 2772 0.66 0.734831
Target:  5'- cUCGaGGCC-CGCccccgagGGGCUGCCGcCG-GCg -3'
miRNA:   3'- -AGUaCCGGuGCG-------UCCGGCGGU-GCaCG- -5'
23826 5' -60 NC_005261.1 + 3369 0.7 0.452459
Target:  5'- uUCAgGGCCGCGagcgcGGCCGCCAgcCGcGCc -3'
miRNA:   3'- -AGUaCCGGUGCgu---CCGGCGGU--GCaCG- -5'
23826 5' -60 NC_005261.1 + 3448 0.81 0.09684
Target:  5'- ---cGGgCGCGCGGGCCGCCGCGccGCg -3'
miRNA:   3'- aguaCCgGUGCGUCCGGCGGUGCa-CG- -5'
23826 5' -60 NC_005261.1 + 3517 0.66 0.695739
Target:  5'- ---cGGCCgccuccaGCGCGgcGGCCGCCuCG-GCg -3'
miRNA:   3'- aguaCCGG-------UGCGU--CCGGCGGuGCaCG- -5'
23826 5' -60 NC_005261.1 + 3670 0.7 0.452459
Target:  5'- ---aGGCCGCggccgGCAGGCCGCgGCccgcUGCa -3'
miRNA:   3'- aguaCCGGUG-----CGUCCGGCGgUGc---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.