miRNA display CGI


Results 1 - 20 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23826 5' -60 NC_005261.1 + 112688 0.66 0.735793
Target:  5'- ---gGGCUggGCGUcgAGGCCguGCC-CGUGCa -3'
miRNA:   3'- aguaCCGG--UGCG--UCCGG--CGGuGCACG- -5'
23826 5' -60 NC_005261.1 + 106558 0.78 0.149665
Target:  5'- gUCcgGGCCgGCGCgcgccggccccgGGGCCGCCGCGcgGCg -3'
miRNA:   3'- -AGuaCCGG-UGCG------------UCCGGCGGUGCa-CG- -5'
23826 5' -60 NC_005261.1 + 65537 0.78 0.16545
Target:  5'- ---cGGCCGCGCGGGCaGCagCGCGUGCc -3'
miRNA:   3'- aguaCCGGUGCGUCCGgCG--GUGCACG- -5'
23826 5' -60 NC_005261.1 + 4300 0.77 0.173891
Target:  5'- ---gGGCCcCGC-GGCCGCCGCGUaGCg -3'
miRNA:   3'- aguaCCGGuGCGuCCGGCGGUGCA-CG- -5'
23826 5' -60 NC_005261.1 + 44981 0.77 0.173891
Target:  5'- ---gGGcCCGgGCGGGCCGCCACagGUGCu -3'
miRNA:   3'- aguaCC-GGUgCGUCCGGCGGUG--CACG- -5'
23826 5' -60 NC_005261.1 + 12338 0.77 0.178254
Target:  5'- --uUGGCCgGCGCGGccGCCGCCGCGgcgGCa -3'
miRNA:   3'- aguACCGG-UGCGUC--CGGCGGUGCa--CG- -5'
23826 5' -60 NC_005261.1 + 29663 0.77 0.181365
Target:  5'- cCAUGGCCGCGCAGaacgcgcugugggcGCUGCCgcACGUGg -3'
miRNA:   3'- aGUACCGGUGCGUC--------------CGGCGG--UGCACg -5'
23826 5' -60 NC_005261.1 + 39874 0.77 0.196689
Target:  5'- aCAcGGCCA-GCAGGCCGCgCGCGcgGCu -3'
miRNA:   3'- aGUaCCGGUgCGUCCGGCG-GUGCa-CG- -5'
23826 5' -60 NC_005261.1 + 39974 0.76 0.201551
Target:  5'- cUCAgcgGGUUGCGCGcGCCGCCGgCGUGCg -3'
miRNA:   3'- -AGUa--CCGGUGCGUcCGGCGGU-GCACG- -5'
23826 5' -60 NC_005261.1 + 38942 0.79 0.135262
Target:  5'- ---cGGCCGgGCGGGCCGCgGCGcGCg -3'
miRNA:   3'- aguaCCGGUgCGUCCGGCGgUGCaCG- -5'
23826 5' -60 NC_005261.1 + 107309 0.79 0.128549
Target:  5'- ---cGGCCAC---GGCCGCCGCGUGCa -3'
miRNA:   3'- aguaCCGGUGcguCCGGCGGUGCACG- -5'
23826 5' -60 NC_005261.1 + 101127 0.79 0.128549
Target:  5'- cUCGUGGUCcucGCGCgAGGCUGCCGCGcgGCg -3'
miRNA:   3'- -AGUACCGG---UGCG-UCCGGCGGUGCa-CG- -5'
23826 5' -60 NC_005261.1 + 46676 0.82 0.082814
Target:  5'- --uUGGCCGCGCGcuccacggcGGCCGCCACG-GCa -3'
miRNA:   3'- aguACCGGUGCGU---------CCGGCGGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 121813 0.82 0.087259
Target:  5'- gCGUGGCUGggcucUGCGGGCCGCCGCGgcgGCg -3'
miRNA:   3'- aGUACCGGU-----GCGUCCGGCGGUGCa--CG- -5'
23826 5' -60 NC_005261.1 + 75481 0.82 0.089566
Target:  5'- ---cGGCgGCGCGGGCCGCUACGaGCg -3'
miRNA:   3'- aguaCCGgUGCGUCCGGCGGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 3448 0.81 0.09684
Target:  5'- ---cGGgCGCGCGGGCCGCCGCGccGCg -3'
miRNA:   3'- aguaCCgGUGCGUCCGGCGGUGCa-CG- -5'
23826 5' -60 NC_005261.1 + 54082 0.81 0.107409
Target:  5'- ---aGGCCGCGCGGaCCGCCACGUuGCc -3'
miRNA:   3'- aguaCCGGUGCGUCcGGCGGUGCA-CG- -5'
23826 5' -60 NC_005261.1 + 68992 0.81 0.107409
Target:  5'- uUUcgGGCCGCGCGGG-CGCCGCG-GCu -3'
miRNA:   3'- -AGuaCCGGUGCGUCCgGCGGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 54993 0.8 0.122144
Target:  5'- ---cGGCCACGCcGGCgGCCuCGUGCa -3'
miRNA:   3'- aguaCCGGUGCGuCCGgCGGuGCACG- -5'
23826 5' -60 NC_005261.1 + 63741 0.8 0.125309
Target:  5'- gCAUGGCCgcggcgGCGUAGGCCGCCGUGUaGCc -3'
miRNA:   3'- aGUACCGG------UGCGUCCGGCGGUGCA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.