miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23828 3' -46.2 NC_005261.1 + 28592 0.67 0.999708
Target:  5'- cGCCGGCGggccgccCGCGCcGAGCUgGcgGAg -3'
miRNA:   3'- -CGGUCGCaa-----GCGUGuUUUGAgUuaUU- -5'
23828 3' -46.2 NC_005261.1 + 92156 0.66 0.999923
Target:  5'- cUCGGCGagCGCGC---GCUCGGUGGa -3'
miRNA:   3'- cGGUCGCaaGCGUGuuuUGAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 108515 0.66 0.999866
Target:  5'- gGCCAcGCcg-CGCACGAAGggguCUCGGUAGg -3'
miRNA:   3'- -CGGU-CGcaaGCGUGUUUU----GAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 44982 0.66 0.999898
Target:  5'- gGCCcgGGCGggcCGcCACAGGuGCUCGAUGAc -3'
miRNA:   3'- -CGG--UCGCaa-GC-GUGUUU-UGAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 59258 0.66 0.999866
Target:  5'- cGCCGGCGccacgcgUCGCACGGcGugUCGc--- -3'
miRNA:   3'- -CGGUCGCa------AGCGUGUU-UugAGUuauu -5'
23828 3' -46.2 NC_005261.1 + 48211 0.66 0.999866
Target:  5'- gGCCGGCGcgCGUuuCAGAGCgcgCAAa-- -3'
miRNA:   3'- -CGGUCGCaaGCGu-GUUUUGa--GUUauu -5'
23828 3' -46.2 NC_005261.1 + 75319 0.66 0.999898
Target:  5'- cGUCGGCGg-CGCGCGGAGCcCuGUGAc -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUUUGaGuUAUU- -5'
23828 3' -46.2 NC_005261.1 + 103824 0.66 0.999773
Target:  5'- cGCCAGCaGcUCGCGgaGGAGCUCGc--- -3'
miRNA:   3'- -CGGUCG-CaAGCGUg-UUUUGAGUuauu -5'
23828 3' -46.2 NC_005261.1 + 106935 0.66 0.999773
Target:  5'- cGCCAGCGacaCGCGCAc--CUCGGc-- -3'
miRNA:   3'- -CGGUCGCaa-GCGUGUuuuGAGUUauu -5'
23828 3' -46.2 NC_005261.1 + 22828 0.67 0.999708
Target:  5'- cGCCGcCGUUgGCGCcGGGCUCGGg-- -3'
miRNA:   3'- -CGGUcGCAAgCGUGuUUUGAGUUauu -5'
23828 3' -46.2 NC_005261.1 + 115926 0.66 0.999773
Target:  5'- cGCC-GCGUccgCGCGCGGGGCagGGUAc -3'
miRNA:   3'- -CGGuCGCAa--GCGUGUUUUGagUUAUu -5'
23828 3' -46.2 NC_005261.1 + 119653 0.67 0.999627
Target:  5'- aCCGGCGgcgCGCGCcuGGAGCUCu---- -3'
miRNA:   3'- cGGUCGCaa-GCGUG--UUUUGAGuuauu -5'
23828 3' -46.2 NC_005261.1 + 12321 0.67 0.999528
Target:  5'- aGCCGGCGggCGCGC---GCUUGGc-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5'
23828 3' -46.2 NC_005261.1 + 71497 0.67 0.999528
Target:  5'- gGCCAG-GUgCGCGCGAAAgUCGGc-- -3'
miRNA:   3'- -CGGUCgCAaGCGUGUUUUgAGUUauu -5'
23828 3' -46.2 NC_005261.1 + 19377 0.67 0.999406
Target:  5'- uGCCAGCcaggcCGUaguaGCGGGGCUCGGUGAu -3'
miRNA:   3'- -CGGUCGcaa--GCG----UGUUUUGAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 85892 0.67 0.999257
Target:  5'- aCCAGCccgCGCACGAAcgcCUCGGUGg -3'
miRNA:   3'- cGGUCGcaaGCGUGUUUu--GAGUUAUu -5'
23828 3' -46.2 NC_005261.1 + 68536 0.68 0.999058
Target:  5'- cGCCGGCGccCGCGCGcccccugcugcgcGGGCUCuuUGAg -3'
miRNA:   3'- -CGGUCGCaaGCGUGU-------------UUUGAGuuAUU- -5'
23828 3' -46.2 NC_005261.1 + 54020 0.68 0.998606
Target:  5'- cGCgAGCGcUUCGCGCAcgcGCUCcGUGu -3'
miRNA:   3'- -CGgUCGC-AAGCGUGUuu-UGAGuUAUu -5'
23828 3' -46.2 NC_005261.1 + 1897 0.68 0.998606
Target:  5'- cGCCAGCG--CGCGCc--GCUCAGg-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5'
23828 3' -46.2 NC_005261.1 + 19279 0.69 0.997944
Target:  5'- cGCCAGCGUcUCGUACGcGACg------ -3'
miRNA:   3'- -CGGUCGCA-AGCGUGUuUUGaguuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.