miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 3' -50.4 NC_005261.1 + 10644 1.12 0.006599
Target:  5'- gGACGACUACGAGGACGACGAAGAAGCu -3'
miRNA:   3'- -CUGCUGAUGCUCCUGCUGCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 22946 0.89 0.171164
Target:  5'- uGACGACgagacgACGAGGACGACGAggccgaggaccgggaGGAGGCg -3'
miRNA:   3'- -CUGCUGa-----UGCUCCUGCUGCU---------------UCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 134841 0.89 0.178452
Target:  5'- -cCGACUGCGAGGAgGACGggGAcaaGGCg -3'
miRNA:   3'- cuGCUGAUGCUCCUgCUGCuuCU---UCG- -5'
23832 3' -50.4 NC_005261.1 + 90149 0.87 0.219146
Target:  5'- gGGCGAUgGgGAGGAUGACGggGAGGCg -3'
miRNA:   3'- -CUGCUGaUgCUCCUGCUGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 22901 0.87 0.236344
Target:  5'- cGACGACgaggacgACGAGGACGACGAGGAc-- -3'
miRNA:   3'- -CUGCUGa------UGCUCCUGCUGCUUCUucg -5'
23832 3' -50.4 NC_005261.1 + 51999 0.86 0.248427
Target:  5'- -cCGACUuCGAGGACGACGAcgaGGAGGCc -3'
miRNA:   3'- cuGCUGAuGCUCCUGCUGCU---UCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 30680 0.82 0.424809
Target:  5'- gGACGGggACGGGGACgggGACGggGAGGCc -3'
miRNA:   3'- -CUGCUgaUGCUCCUG---CUGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 34286 0.82 0.428475
Target:  5'- cGGCGGCcgGCGGGGAcgccgggagcgagacCGACGggGAGGCc -3'
miRNA:   3'- -CUGCUGa-UGCUCCU---------------GCUGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 30458 0.81 0.452747
Target:  5'- cGAgGACgggggggACGGGGGgGACGAGGAGGCc -3'
miRNA:   3'- -CUgCUGa------UGCUCCUgCUGCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 28672 0.81 0.471918
Target:  5'- cGACGACgACGAGGGgGAgGAGGAAGa -3'
miRNA:   3'- -CUGCUGaUGCUCCUgCUgCUUCUUCg -5'
23832 3' -50.4 NC_005261.1 + 56003 0.8 0.501419
Target:  5'- cGCGGCggggGCGGGGGCGGgGAAGAcGCa -3'
miRNA:   3'- cUGCUGa---UGCUCCUGCUgCUUCUuCG- -5'
23832 3' -50.4 NC_005261.1 + 113277 0.8 0.521529
Target:  5'- cGACGGCUACGAGGGCGugGuccucucGCu -3'
miRNA:   3'- -CUGCUGAUGCUCCUGCugCuucuu--CG- -5'
23832 3' -50.4 NC_005261.1 + 88288 0.8 0.521529
Target:  5'- cGACGACggcgGCGccAGcGACGACGAAGAGGg -3'
miRNA:   3'- -CUGCUGa---UGC--UC-CUGCUGCUUCUUCg -5'
23832 3' -50.4 NC_005261.1 + 10620 0.8 0.511433
Target:  5'- gGACGACUACGAGGACGACu------- -3'
miRNA:   3'- -CUGCUGAUGCUCCUGCUGcuucuucg -5'
23832 3' -50.4 NC_005261.1 + 96269 0.79 0.573037
Target:  5'- -uCGAgUACGAGGACGACGcuGgcGCg -3'
miRNA:   3'- cuGCUgAUGCUCCUGCUGCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 97950 0.78 0.604529
Target:  5'- cGGCGGCaACGAGGGaggUGGCGgcGGAGCg -3'
miRNA:   3'- -CUGCUGaUGCUCCU---GCUGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 1120 0.78 0.625646
Target:  5'- gGACGACgAgGAGGACG-CGGAGGAcGCg -3'
miRNA:   3'- -CUGCUGaUgCUCCUGCuGCUUCUU-CG- -5'
23832 3' -50.4 NC_005261.1 + 43098 0.78 0.625646
Target:  5'- cGCGcGCUACGAGGACGugGcgcGGGAuuGGCg -3'
miRNA:   3'- cUGC-UGAUGCUCCUGCugC---UUCU--UCG- -5'
23832 3' -50.4 NC_005261.1 + 128878 0.78 0.625646
Target:  5'- cGACGACgagGCGGGGGCcggGugGGAGGcgGGCg -3'
miRNA:   3'- -CUGCUGa--UGCUCCUG---CugCUUCU--UCG- -5'
23832 3' -50.4 NC_005261.1 + 105157 0.77 0.636216
Target:  5'- cGCGGCU-CGAGGGCGGCGuccacGggGCc -3'
miRNA:   3'- cUGCUGAuGCUCCUGCUGCuu---CuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.