miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 5' -61.4 NC_005261.1 + 34940 0.66 0.668435
Target:  5'- -gGCgGCCGgcgcgaCCCgggCCCGGCGGccuGGa -3'
miRNA:   3'- gaCGgCGGCag----GGGa--GGGCCGUUu--CC- -5'
23832 5' -61.4 NC_005261.1 + 16394 0.66 0.638893
Target:  5'- -cGCCGUCGUCgUCgCCgGGCGGugcGGGa -3'
miRNA:   3'- gaCGGCGGCAGgGGaGGgCCGUU---UCC- -5'
23832 5' -61.4 NC_005261.1 + 108323 0.66 0.668435
Target:  5'- -gGCCGCCGcgugCUCCgcgaCCCGcGCcAGGGc -3'
miRNA:   3'- gaCGGCGGCa---GGGGa---GGGC-CGuUUCC- -5'
23832 5' -61.4 NC_005261.1 + 53368 0.66 0.658605
Target:  5'- -gGCCGCCG-CCCCggCCgCGGUg---- -3'
miRNA:   3'- gaCGGCGGCaGGGGa-GG-GCCGuuucc -5'
23832 5' -61.4 NC_005261.1 + 92930 0.66 0.668435
Target:  5'- gUGCCGgCGgagcagcugCCCggcgUCCCGGaCAAAGGc -3'
miRNA:   3'- gACGGCgGCa--------GGGg---AGGGCC-GUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 59596 0.66 0.668435
Target:  5'- -cGCCGCCa-CCaCCUCCgCGGCGcGGcGg -3'
miRNA:   3'- gaCGGCGGcaGG-GGAGG-GCCGUuUC-C- -5'
23832 5' -61.4 NC_005261.1 + 100105 0.66 0.658605
Target:  5'- gCUGCCGCCG-CCCagcggcgCCC-GCAccGGc -3'
miRNA:   3'- -GACGGCGGCaGGGga-----GGGcCGUuuCC- -5'
23832 5' -61.4 NC_005261.1 + 105134 0.66 0.657621
Target:  5'- -gGCCGCCGgcgCgcgcaggUCCUCgCGGCucGAGGg -3'
miRNA:   3'- gaCGGCGGCa--G-------GGGAGgGCCGu-UUCC- -5'
23832 5' -61.4 NC_005261.1 + 91141 0.66 0.648755
Target:  5'- -gGCCucaGCCGUgCCg-CCCGGCGAGuGGc -3'
miRNA:   3'- gaCGG---CGGCAgGGgaGGGCCGUUU-CC- -5'
23832 5' -61.4 NC_005261.1 + 125678 0.66 0.64777
Target:  5'- gUGCCGCCGaauggguUUgCCgggcuuggCCCGGCGAcGGc -3'
miRNA:   3'- gACGGCGGC-------AGgGGa-------GGGCCGUUuCC- -5'
23832 5' -61.4 NC_005261.1 + 87396 0.66 0.688004
Target:  5'- -gGCCGUCGUCucgacggcgCCgUCgacgggcgcgCCGGCGAAGGc -3'
miRNA:   3'- gaCGGCGGCAG---------GGgAG----------GGCCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 71452 0.66 0.658605
Target:  5'- -aGCCGCCG---CCUCCCGGagcaucagGAAGGc -3'
miRNA:   3'- gaCGGCGGCaggGGAGGGCCg-------UUUCC- -5'
23832 5' -61.4 NC_005261.1 + 90047 0.66 0.662539
Target:  5'- cCUGCUGCCGgacagccagcggcgCCCCg-CgGGCGccGAGGg -3'
miRNA:   3'- -GACGGCGGCa-------------GGGGagGgCCGU--UUCC- -5'
23832 5' -61.4 NC_005261.1 + 28890 0.66 0.658605
Target:  5'- -cGCCGCCG-CCUgcgCCCaacGCGGAGGa -3'
miRNA:   3'- gaCGGCGGCaGGGga-GGGc--CGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 111647 0.66 0.638893
Target:  5'- -cGCCGCCGcCucccagCCCUCCCGcGCcgcGGu -3'
miRNA:   3'- gaCGGCGGCaG------GGGAGGGC-CGuuuCC- -5'
23832 5' -61.4 NC_005261.1 + 10537 0.66 0.668435
Target:  5'- -cGCuCGCUGUCgCC-CCCGGCGc--- -3'
miRNA:   3'- gaCG-GCGGCAGgGGaGGGCCGUuucc -5'
23832 5' -61.4 NC_005261.1 + 53428 0.66 0.638893
Target:  5'- --cCCGCCGUCCgCCagCCCgucgGGCGucGGg -3'
miRNA:   3'- gacGGCGGCAGG-GGa-GGG----CCGUuuCC- -5'
23832 5' -61.4 NC_005261.1 + 22634 0.66 0.667453
Target:  5'- -cGCC-CCGUCCCgUCCCuagacgcgcuggcGGCGccuGGGc -3'
miRNA:   3'- gaCGGcGGCAGGGgAGGG-------------CCGUu--UCC- -5'
23832 5' -61.4 NC_005261.1 + 29282 0.66 0.678237
Target:  5'- -cGCUGCUGaCgCCCUCC-GGCGAGGc -3'
miRNA:   3'- gaCGGCGGCaG-GGGAGGgCCGUUUCc -5'
23832 5' -61.4 NC_005261.1 + 24586 0.66 0.668435
Target:  5'- cCUGCaC-CCGcCCCCagUCCCGGCGGc-- -3'
miRNA:   3'- -GACG-GcGGCaGGGG--AGGGCCGUUucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.