miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 5' -61.4 NC_005261.1 + 87396 0.66 0.688004
Target:  5'- -gGCCGUCGUCucgacggcgCCgUCgacgggcgcgCCGGCGAAGGc -3'
miRNA:   3'- gaCGGCGGCAG---------GGgAG----------GGCCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 56786 0.73 0.287631
Target:  5'- -cGCCGCgGUugCCCaCUUCCGGCAgcGGg -3'
miRNA:   3'- gaCGGCGgCA--GGG-GAGGGCCGUuuCC- -5'
23832 5' -61.4 NC_005261.1 + 91898 0.73 0.294169
Target:  5'- uCUGCCcCCGcCCCCgUCCCGGCGc--- -3'
miRNA:   3'- -GACGGcGGCaGGGG-AGGGCCGUuucc -5'
23832 5' -61.4 NC_005261.1 + 132079 0.73 0.294169
Target:  5'- -gGCCGCCGUCgCCgCUgCC-GCGGAGGg -3'
miRNA:   3'- gaCGGCGGCAG-GG-GAgGGcCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 55981 0.73 0.294169
Target:  5'- -cGCCGCCGUCgCCaucggcaaCCgCGGCGGGGGc -3'
miRNA:   3'- gaCGGCGGCAGgGGa-------GG-GCCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 1227 0.73 0.307591
Target:  5'- aUGCCGCCGUCgCCggcCCCGGgAAGc- -3'
miRNA:   3'- gACGGCGGCAGgGGa--GGGCCgUUUcc -5'
23832 5' -61.4 NC_005261.1 + 45688 0.72 0.328592
Target:  5'- -gGCUGCUGaacgggCCCCUCgCCGcGCAGGGGu -3'
miRNA:   3'- gaCGGCGGCa-----GGGGAG-GGC-CGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 83014 0.72 0.335824
Target:  5'- -aGCCGCCGUCgCCggcgccCCCGG-GAGGGc -3'
miRNA:   3'- gaCGGCGGCAGgGGa-----GGGCCgUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 129918 0.72 0.343171
Target:  5'- gCUGuCCGUCGUgCCCUCCaCGGCGc--- -3'
miRNA:   3'- -GAC-GGCGGCAgGGGAGG-GCCGUuucc -5'
23832 5' -61.4 NC_005261.1 + 110021 0.73 0.281208
Target:  5'- -cGCCGCCGUCCUUucgCCUGGC--GGGc -3'
miRNA:   3'- gaCGGCGGCAGGGGa--GGGCCGuuUCC- -5'
23832 5' -61.4 NC_005261.1 + 102705 0.73 0.273651
Target:  5'- gCUGCCGCCGUCUCCgccgcguccgcgCCCGccGCcAGGGc -3'
miRNA:   3'- -GACGGCGGCAGGGGa-----------GGGC--CGuUUCC- -5'
23832 5' -61.4 NC_005261.1 + 78773 0.74 0.262623
Target:  5'- uUGCC-CCGcCCCCUCCCccgccGCAGGGGc -3'
miRNA:   3'- gACGGcGGCaGGGGAGGGc----CGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 48007 0.79 0.1152
Target:  5'- -aGCCGCCGUCgCCC-CgCCGGCAGAGc -3'
miRNA:   3'- gaCGGCGGCAG-GGGaG-GGCCGUUUCc -5'
23832 5' -61.4 NC_005261.1 + 84283 0.79 0.118139
Target:  5'- gUGCCGCCGgcggCCCCggcCCCGGCGgcgccgAAGGc -3'
miRNA:   3'- gACGGCGGCa---GGGGa--GGGCCGU------UUCC- -5'
23832 5' -61.4 NC_005261.1 + 5983 0.79 0.121147
Target:  5'- uCUGCCGCgCGUCUccgcuCCUCCCgcGGCGAGGGc -3'
miRNA:   3'- -GACGGCG-GCAGG-----GGAGGG--CCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 30911 0.77 0.155377
Target:  5'- -gGCCGCCcggCCCCUCCCGGCcgccGGc -3'
miRNA:   3'- gaCGGCGGca-GGGGAGGGCCGuuu-CC- -5'
23832 5' -61.4 NC_005261.1 + 114998 0.76 0.202933
Target:  5'- -gGCCGCCGcggCCCCggCCCcGCGGAGGc -3'
miRNA:   3'- gaCGGCGGCa--GGGGa-GGGcCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 33273 0.75 0.228462
Target:  5'- -gGCCcCCGUCCCCgUCCCGGUccguGGGc -3'
miRNA:   3'- gaCGGcGGCAGGGG-AGGGCCGuu--UCC- -5'
23832 5' -61.4 NC_005261.1 + 121553 0.74 0.245049
Target:  5'- -aGCCGCCGUCCU----CGGCGAAGGg -3'
miRNA:   3'- gaCGGCGGCAGGGgaggGCCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 45924 0.74 0.245049
Target:  5'- -cGCCcucGCCGUCCCCgCCgCGcGCGAGGGc -3'
miRNA:   3'- gaCGG---CGGCAGGGGaGG-GC-CGUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.