miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 5' -61.4 NC_005261.1 + 208 0.69 0.484779
Target:  5'- gUGCCGCCGccgCCCCUggugcucgcgggCCCcGCGAGcGGg -3'
miRNA:   3'- gACGGCGGCa--GGGGA------------GGGcCGUUU-CC- -5'
23832 5' -61.4 NC_005261.1 + 1227 0.73 0.307591
Target:  5'- aUGCCGCCGUCgCCggcCCCGGgAAGc- -3'
miRNA:   3'- gACGGCGGCAGgGGa--GGGCCgUUUcc -5'
23832 5' -61.4 NC_005261.1 + 2038 0.68 0.541113
Target:  5'- -cGCCGCCG-CgCCgcggCCagccgcaGGCAGAGGu -3'
miRNA:   3'- gaCGGCGGCaGgGGa---GGg------CCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 2289 0.68 0.560395
Target:  5'- -cGCCGCCaG-CgCCUCCCcgGGCAgcGGg -3'
miRNA:   3'- gaCGGCGG-CaGgGGAGGG--CCGUuuCC- -5'
23832 5' -61.4 NC_005261.1 + 3142 0.68 0.522058
Target:  5'- -cGUCcCCGUCCCCguccgaggcCCCGGCGgcGGc -3'
miRNA:   3'- gaCGGcGGCAGGGGa--------GGGCCGUuuCC- -5'
23832 5' -61.4 NC_005261.1 + 3919 0.69 0.493984
Target:  5'- -cGCCGCCGgcgCCggCCUCCgGGUAGgccauGGGc -3'
miRNA:   3'- gaCGGCGGCa--GG--GGAGGgCCGUU-----UCC- -5'
23832 5' -61.4 NC_005261.1 + 4093 0.68 0.570108
Target:  5'- -cGgCGCCGUCaCgCUCCCGGUGAu-- -3'
miRNA:   3'- gaCgGCGGCAG-GgGAGGGCCGUUucc -5'
23832 5' -61.4 NC_005261.1 + 5181 0.69 0.512628
Target:  5'- -gGCCGgguccuccuCCGggccCCCCUCCgGGCcGAGGu -3'
miRNA:   3'- gaCGGC---------GGCa---GGGGAGGgCCGuUUCC- -5'
23832 5' -61.4 NC_005261.1 + 5983 0.79 0.121147
Target:  5'- uCUGCCGCgCGUCUccgcuCCUCCCgcGGCGAGGGc -3'
miRNA:   3'- -GACGGCG-GCAGG-----GGAGGG--CCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 8805 0.7 0.461242
Target:  5'- -aGCCGCCGagggcuugaaggggCgCCCgCCgGGCAAGGGg -3'
miRNA:   3'- gaCGGCGGCa-------------G-GGGaGGgCCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 9034 0.67 0.619162
Target:  5'- aUGCaC-CCGcCCCCcgUCCCGGCAuccccuGGGu -3'
miRNA:   3'- gACG-GcGGCaGGGG--AGGGCCGUu-----UCC- -5'
23832 5' -61.4 NC_005261.1 + 10085 0.7 0.457675
Target:  5'- -aGCCGCCcgacCCCCgccgcgcCCCGGCAgcGGc -3'
miRNA:   3'- gaCGGCGGca--GGGGa------GGGCCGUuuCC- -5'
23832 5' -61.4 NC_005261.1 + 10537 0.66 0.668435
Target:  5'- -cGCuCGCUGUCgCC-CCCGGCGc--- -3'
miRNA:   3'- gaCG-GCGGCAGgGGaGGGCCGUuucc -5'
23832 5' -61.4 NC_005261.1 + 10678 1.09 0.000979
Target:  5'- gCUGCCGCCGUCCCCUCCCGGCAAAGGc -3'
miRNA:   3'- -GACGGCGGCAGGGGAGGGCCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 10736 0.69 0.466621
Target:  5'- cCU-CCGCCGcCUCCUCCCGGUccucGGc -3'
miRNA:   3'- -GAcGGCGGCaGGGGAGGGCCGuuu-CC- -5'
23832 5' -61.4 NC_005261.1 + 11026 0.68 0.560395
Target:  5'- -cGUCGCCGggCCCguccCCCGGCGGcacucGGGc -3'
miRNA:   3'- gaCGGCGGCagGGGa---GGGCCGUU-----UCC- -5'
23832 5' -61.4 NC_005261.1 + 12732 0.71 0.380827
Target:  5'- -gGcCCGCCGgcCCCCUgggcgggCCCGGCGAGGu -3'
miRNA:   3'- gaC-GGCGGCa-GGGGA-------GGGCCGUUUCc -5'
23832 5' -61.4 NC_005261.1 + 13780 0.68 0.522058
Target:  5'- --cCCGCCcUCgCCCUgCCCGGCGGGGu -3'
miRNA:   3'- gacGGCGGcAG-GGGA-GGGCCGUUUCc -5'
23832 5' -61.4 NC_005261.1 + 13899 0.7 0.431402
Target:  5'- -cGCCGCCGUCCUC-CUCGGUc---- -3'
miRNA:   3'- gaCGGCGGCAGGGGaGGGCCGuuucc -5'
23832 5' -61.4 NC_005261.1 + 16394 0.66 0.638893
Target:  5'- -cGCCGUCGUCgUCgCCgGGCGGugcGGGa -3'
miRNA:   3'- gaCGGCGGCAGgGGaGGgCCGUU---UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.