miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23833 5' -57.6 NC_005261.1 + 98574 0.67 0.81775
Target:  5'- gCCGUCcuccgCGGGCucgGGCGAGuaGGCGGCGc -3'
miRNA:   3'- aGGUAGa----GCCUG---CCGCUC--CUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 98053 0.68 0.773464
Target:  5'- gCCg---CGGGCGGCGGgaccgcGGGCGGCGg -3'
miRNA:   3'- aGGuagaGCCUGCCGCU------CCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 97806 0.65 0.870572
Target:  5'- aCCGUC-CGccggcgcccccgcaGACGGCGgcaaaaacgGGGGCGGCGg -3'
miRNA:   3'- aGGUAGaGC--------------CUGCCGC---------UCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 95142 0.66 0.842432
Target:  5'- gUCCGcCUgcuggucgcCGGgaaccugcaguGCGGCGAGGGgGACGUg -3'
miRNA:   3'- -AGGUaGA---------GCC-----------UGCCGCUCCUgCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 93667 0.66 0.857977
Target:  5'- aCCgGUCcgCGGGCGGCGgcgccggcGGGGCGcCGg -3'
miRNA:   3'- aGG-UAGa-GCCUGCCGC--------UCCUGCuGCa -5'
23833 5' -57.6 NC_005261.1 + 92466 0.66 0.863234
Target:  5'- gUCGUC-CGGAUGaGCGGcaccgcgagcucgcGGACGGCGg -3'
miRNA:   3'- aGGUAGaGCCUGC-CGCU--------------CCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 91400 0.71 0.576582
Target:  5'- aUCGUCgCGccCGGCGAGGACGugGa -3'
miRNA:   3'- aGGUAGaGCcuGCCGCUCCUGCugCa -5'
23833 5' -57.6 NC_005261.1 + 90369 0.66 0.842432
Target:  5'- aCCAcgCUCGuGcGCGGCGAGGccccgcCGGCGg -3'
miRNA:   3'- aGGUa-GAGC-C-UGCCGCUCCu-----GCUGCa -5'
23833 5' -57.6 NC_005261.1 + 90117 0.69 0.676849
Target:  5'- gCCGaCgCGGcccGCGGCGAGGGCGAgGa -3'
miRNA:   3'- aGGUaGaGCC---UGCCGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 87400 0.66 0.842432
Target:  5'- gUCGUCUC-GACGGCGccGuCGACGg -3'
miRNA:   3'- aGGUAGAGcCUGCCGCucCuGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 85928 0.68 0.745363
Target:  5'- aCCGUgCUCuGGAUGGCGgccAGGGCGccGCGg -3'
miRNA:   3'- aGGUA-GAG-CCUGCCGC---UCCUGC--UGCa -5'
23833 5' -57.6 NC_005261.1 + 85553 0.68 0.773464
Target:  5'- cUCCGUCUgCGGcGCcGCGAGGuuCGGCGc -3'
miRNA:   3'- -AGGUAGA-GCC-UGcCGCUCCu-GCUGCa -5'
23833 5' -57.6 NC_005261.1 + 81332 0.67 0.81775
Target:  5'- gCCGUCgUCGGGgccguCGGCG-GGGCGGgGg -3'
miRNA:   3'- aGGUAG-AGCCU-----GCCGCuCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 78409 0.7 0.656827
Target:  5'- cUCCGUgCUCuGugGGCGAugggggGGGCGAUGg -3'
miRNA:   3'- -AGGUA-GAGcCugCCGCU------CCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 77766 0.75 0.351985
Target:  5'- gCCG----GGGCGGCGGGGACGACGa -3'
miRNA:   3'- aGGUagagCCUGCCGCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 75605 0.71 0.576582
Target:  5'- gCCG-CggacgCGGACGGCGucgcguacguGGACGACGUc -3'
miRNA:   3'- aGGUaGa----GCCUGCCGCu---------CCUGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 74916 0.66 0.8503
Target:  5'- gCCGcgCgggGGAgGGCGAGGACGGgGa -3'
miRNA:   3'- aGGUa-Gag-CCUgCCGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 68682 0.67 0.82615
Target:  5'- gUCCGcCgcgUGGGggcCGGCGcGGACGACGg -3'
miRNA:   3'- -AGGUaGa--GCCU---GCCGCuCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 68073 0.66 0.865456
Target:  5'- gUgGUCUCGGuCGcccGCGGGGGCGGgGa -3'
miRNA:   3'- aGgUAGAGCCuGC---CGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 67079 0.66 0.865456
Target:  5'- gCUcgCUCGGGCGGUccauGGcGCGACGc -3'
miRNA:   3'- aGGuaGAGCCUGCCGcu--CC-UGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.