miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23836 3' -58.4 NC_005261.1 + 12331 0.66 0.767979
Target:  5'- cGCGCGcuUGGccggcGCGGCCGccGCCgCGGCGg -3'
miRNA:   3'- -UGUGC--ACUu----UGCCGGCu-CGGgGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 104411 0.66 0.78
Target:  5'- aGCGCGccGAAACGGCgccgcacagcuugagCGGGCCCgcgucgccgccgcCGGCGg -3'
miRNA:   3'- -UGUGCa-CUUUGCCG---------------GCUCGGG-------------GUCGC- -5'
23836 3' -58.4 NC_005261.1 + 130482 0.66 0.786383
Target:  5'- -gGCGUGccucGGCGGCgaGGGCCCCGaCGa -3'
miRNA:   3'- ugUGCACu---UUGCCGg-CUCGGGGUcGC- -5'
23836 3' -58.4 NC_005261.1 + 69253 0.66 0.777244
Target:  5'- gGCGC-UGGccCGcGCCGA-CCCCGGCGa -3'
miRNA:   3'- -UGUGcACUuuGC-CGGCUcGGGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 44203 0.66 0.780915
Target:  5'- aGCGCGagcUGcAGGCGGCCcggGAGCgcgcgcugcuggccgCCCAGCGc -3'
miRNA:   3'- -UGUGC---AC-UUUGCCGG---CUCG---------------GGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 23355 0.66 0.777244
Target:  5'- cGCGCGUGu--CGGCCGugacaaacGCCgagCCGGUGg -3'
miRNA:   3'- -UGUGCACuuuGCCGGCu-------CGG---GGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 119520 0.66 0.777244
Target:  5'- cACGCGgccccGGuccccGCGGCCGAgcaagGCCCCGccGCGg -3'
miRNA:   3'- -UGUGCa----CUu----UGCCGGCU-----CGGGGU--CGC- -5'
23836 3' -58.4 NC_005261.1 + 107897 0.66 0.767979
Target:  5'- cCGCuUGuccGCGGCCGcGGCCUCGGCc -3'
miRNA:   3'- uGUGcACuu-UGCCGGC-UCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 116164 0.66 0.812951
Target:  5'- cGCGCG-GucGCGGCCGcGUCCCcgacgccgcugGGCGc -3'
miRNA:   3'- -UGUGCaCuuUGCCGGCuCGGGG-----------UCGC- -5'
23836 3' -58.4 NC_005261.1 + 70985 0.66 0.777244
Target:  5'- aGCGCGUGGcgcgcgGGCGGCC--GCCaggCCAGCu -3'
miRNA:   3'- -UGUGCACU------UUGCCGGcuCGG---GGUCGc -5'
23836 3' -58.4 NC_005261.1 + 75628 0.66 0.776323
Target:  5'- gUACGUGGAcgacguccaccgcGCGGCCGGcGCguuCCUGGCGc -3'
miRNA:   3'- uGUGCACUU-------------UGCCGGCU-CG---GGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 53358 0.66 0.767979
Target:  5'- cCGCGcuuu-CGGCCGccGCCCCGGCc -3'
miRNA:   3'- uGUGCacuuuGCCGGCu-CGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 5988 0.66 0.778164
Target:  5'- cGCGCGUcuccgcuccucccGCGGCgaGGGCUCCGGCGa -3'
miRNA:   3'- -UGUGCAcuu----------UGCCGg-CUCGGGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 71072 0.66 0.777244
Target:  5'- cGCGCGgcgggcGggGCGuCCGGGCCCgagaaGGCGu -3'
miRNA:   3'- -UGUGCa-----CuuUGCcGGCUCGGGg----UCGC- -5'
23836 3' -58.4 NC_005261.1 + 19955 0.66 0.786383
Target:  5'- -gGgGUGggGCGGCCucGGCUgCGGCa -3'
miRNA:   3'- ugUgCACuuUGCCGGc-UCGGgGUCGc -5'
23836 3' -58.4 NC_005261.1 + 109635 0.66 0.777244
Target:  5'- -gGCGgcuuGCGGCCGccGCCCCAGaCa -3'
miRNA:   3'- ugUGCacuuUGCCGGCu-CGGGGUC-Gc -5'
23836 3' -58.4 NC_005261.1 + 108165 0.66 0.777244
Target:  5'- aGCGCGUccgccaGGGcgcGCGGCCGcGGCUCCGGgCGc -3'
miRNA:   3'- -UGUGCA------CUU---UGCCGGC-UCGGGGUC-GC- -5'
23836 3' -58.4 NC_005261.1 + 128781 0.66 0.767979
Target:  5'- uGCGCGccguUGucuGGGCGcCCGGGCCCgCGGCGg -3'
miRNA:   3'- -UGUGC----AC---UUUGCcGGCUCGGG-GUCGC- -5'
23836 3' -58.4 NC_005261.1 + 28761 0.66 0.767979
Target:  5'- cCGCGgccgGggGCGcCUGGGCCgCGGCGc -3'
miRNA:   3'- uGUGCa---CuuUGCcGGCUCGGgGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 34450 0.66 0.777244
Target:  5'- aACGCGccGggGCacgGGCCGggGGCCCCGuaccuGCGg -3'
miRNA:   3'- -UGUGCa-CuuUG---CCGGC--UCGGGGU-----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.