miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23836 3' -58.4 NC_005261.1 + 1065 0.66 0.795385
Target:  5'- gGCGCGgGggGCuGGCCccGCUCCAGgGc -3'
miRNA:   3'- -UGUGCaCuuUG-CCGGcuCGGGGUCgC- -5'
23836 3' -58.4 NC_005261.1 + 1571 0.7 0.569434
Target:  5'- -aGCG----GCGcGCCGAGcCCCCAGCGg -3'
miRNA:   3'- ugUGCacuuUGC-CGGCUC-GGGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 1626 0.69 0.599547
Target:  5'- cCGCGaagucCGGCucccCGAGCCCCAGCGc -3'
miRNA:   3'- uGUGCacuuuGCCG----GCUCGGGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 1775 0.72 0.436325
Target:  5'- cGCACGuUGGcgccGCGGCaGAGCCgCAGCGg -3'
miRNA:   3'- -UGUGC-ACUu---UGCCGgCUCGGgGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 1964 0.8 0.161058
Target:  5'- uACACGUGcgccugcccGACGGCCGGGCCaUCGGCGg -3'
miRNA:   3'- -UGUGCACu--------UUGCCGGCUCGG-GGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 2389 0.69 0.650106
Target:  5'- gGCGCGcu-GGCGGCgagcgcgcccgCGGGCCCCGcGCGg -3'
miRNA:   3'- -UGUGCacuUUGCCG-----------GCUCGGGGU-CGC- -5'
23836 3' -58.4 NC_005261.1 + 2592 0.69 0.650106
Target:  5'- cACGCGgcgGAAgccgccgucgGCGGCgGGGCCgCCGGgCGg -3'
miRNA:   3'- -UGUGCa--CUU----------UGCCGgCUCGG-GGUC-GC- -5'
23836 3' -58.4 NC_005261.1 + 2802 0.73 0.376775
Target:  5'- -gGCGgccgGGAGgGGCCGggcGGCCCCAGCc -3'
miRNA:   3'- ugUGCa---CUUUgCCGGC---UCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 2932 0.7 0.563452
Target:  5'- aGCACcuccaccgccGCGGCCGGGCUCCGGCc -3'
miRNA:   3'- -UGUGcacuu-----UGCCGGCUCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 3654 0.66 0.795385
Target:  5'- aGCGCGUcuGGAgcgcaggccGCGGCCGgcaGGCCgCGGCc -3'
miRNA:   3'- -UGUGCA--CUU---------UGCCGGC---UCGGgGUCGc -5'
23836 3' -58.4 NC_005261.1 + 4102 0.68 0.660207
Target:  5'- cACGCucccgGUGAugAACGaGCUGuGGCCCCGGCa -3'
miRNA:   3'- -UGUG-----CACU--UUGC-CGGC-UCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 4283 0.71 0.510526
Target:  5'- gGCACGaac-ACGGCCGcgGGCCCC-GCGg -3'
miRNA:   3'- -UGUGCacuuUGCCGGC--UCGGGGuCGC- -5'
23836 3' -58.4 NC_005261.1 + 4479 0.68 0.690344
Target:  5'- cGCGCGgcgccGCGGCguagccugcgCGGGCCCCAGUc -3'
miRNA:   3'- -UGUGCacuu-UGCCG----------GCUCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 4534 0.66 0.804244
Target:  5'- cCGCGgcGAGgGcGCCGGGCCCUGGCc -3'
miRNA:   3'- uGUGCacUUUgC-CGGCUCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 5988 0.66 0.778164
Target:  5'- cGCGCGUcuccgcuccucccGCGGCgaGGGCUCCGGCGa -3'
miRNA:   3'- -UGUGCAcuu----------UGCCGg-CUCGGGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 12015 0.73 0.399091
Target:  5'- --cCGUGAAGCGcucgcccgcgacgcGCuCGAGCCCCAGCc -3'
miRNA:   3'- uguGCACUUUGC--------------CG-GCUCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 12331 0.66 0.767979
Target:  5'- cGCGCGcuUGGccggcGCGGCCGccGCCgCGGCGg -3'
miRNA:   3'- -UGUGC--ACUu----UGCCGGCu-CGGgGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 13640 0.67 0.739508
Target:  5'- uGCACGcgGAAGCGcgcGCCGuGCCgCCGccGCGg -3'
miRNA:   3'- -UGUGCa-CUUUGC---CGGCuCGG-GGU--CGC- -5'
23836 3' -58.4 NC_005261.1 + 14227 0.71 0.48955
Target:  5'- cGCGCgGUGAAGaccgcgcCGGCCGGggccuuuGCCCCGGUGu -3'
miRNA:   3'- -UGUG-CACUUU-------GCCGGCU-------CGGGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 15236 0.69 0.638979
Target:  5'- -gGCGuUGAGGCcccgcucgcagugGGCCGcgaucGCCCCGGCGg -3'
miRNA:   3'- ugUGC-ACUUUG-------------CCGGCu----CGGGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.