Results 1 - 20 of 212 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23836 | 3' | -58.4 | NC_005261.1 | + | 116164 | 0.66 | 0.812951 |
Target: 5'- cGCGCG-GucGCGGCCGcGUCCCcgacgccgcugGGCGc -3' miRNA: 3'- -UGUGCaCuuUGCCGGCuCGGGG-----------UCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 42655 | 0.73 | 0.384942 |
Target: 5'- cGCGCG-GAAccagccaagcgGCGGCCGGGCCgccgCCGGCa -3' miRNA: 3'- -UGUGCaCUU-----------UGCCGGCUCGG----GGUCGc -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 12015 | 0.73 | 0.399091 |
Target: 5'- --cCGUGAAGCGcucgcccgcgacgcGCuCGAGCCCCAGCc -3' miRNA: 3'- uguGCACUUUGC--------------CG-GCUCGGGGUCGc -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 111598 | 0.73 | 0.410133 |
Target: 5'- aGCACGcgGAGugggcGCGGCUGGGCUgCGGCGc -3' miRNA: 3'- -UGUGCa-CUU-----UGCCGGCUCGGgGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 74417 | 0.73 | 0.410133 |
Target: 5'- cCGCGggcGGGAgGGCCGAGgagagcgcccCCCCGGCGg -3' miRNA: 3'- uGUGCa--CUUUgCCGGCUC----------GGGGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 91125 | 0.73 | 0.410133 |
Target: 5'- cGCGCGcc--GCGGCCGAgGCCUCAGCc -3' miRNA: 3'- -UGUGCacuuUGCCGGCU-CGGGGUCGc -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 98350 | 0.73 | 0.418755 |
Target: 5'- gACGCGggggcggGGGugGGCgCGGGCUCUGGCGg -3' miRNA: 3'- -UGUGCa------CUUugCCG-GCUCGGGGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 131021 | 0.73 | 0.418755 |
Target: 5'- cUACGUGuuccaGGCCGAGCgCgCCGGCGa -3' miRNA: 3'- uGUGCACuuug-CCGGCUCG-G-GGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 57470 | 0.72 | 0.427486 |
Target: 5'- aGCACGcGGAACaGGCuCGAGuCCCCcGCGa -3' miRNA: 3'- -UGUGCaCUUUG-CCG-GCUC-GGGGuCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 42263 | 0.73 | 0.384942 |
Target: 5'- cCGCGcGAGGCGGCCGcGCCCagCAGCc -3' miRNA: 3'- uGUGCaCUUUGCCGGCuCGGG--GUCGc -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 2802 | 0.73 | 0.376775 |
Target: 5'- -gGCGgccgGGAGgGGCCGggcGGCCCCAGCc -3' miRNA: 3'- ugUGCa---CUUUgCCGGC---UCGGGGUCGc -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 47154 | 0.75 | 0.330278 |
Target: 5'- -gGCGUc-GGCGGCCGAGaCCaCCAGCGg -3' miRNA: 3'- ugUGCAcuUUGCCGGCUC-GG-GGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 115580 | 0.79 | 0.18709 |
Target: 5'- aACGCGgcgaGGAACuGGCCguacguGAGCCCCAGCGa -3' miRNA: 3'- -UGUGCa---CUUUG-CCGG------CUCGGGGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 99762 | 0.77 | 0.244476 |
Target: 5'- aGCACGUcggacggggaGAGGCGGcCCGGGUCCCAGUc -3' miRNA: 3'- -UGUGCA----------CUUUGCC-GGCUCGGGGUCGc -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 34931 | 0.77 | 0.250362 |
Target: 5'- cACGCGgGggGCGGCCGgcgcgacccGGgCCCGGCGg -3' miRNA: 3'- -UGUGCaCuuUGCCGGC---------UCgGGGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 84278 | 0.76 | 0.288149 |
Target: 5'- cGCAgGUGccgccGGCGGCCccGGCCCCGGCGg -3' miRNA: 3'- -UGUgCACu----UUGCCGGc-UCGGGGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 127674 | 0.76 | 0.288149 |
Target: 5'- -gGCGgGAcggcGGCGGCCGcuGCCCCGGCGg -3' miRNA: 3'- ugUGCaCU----UUGCCGGCu-CGGGGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 34690 | 0.75 | 0.294866 |
Target: 5'- -uGCGUGAcgGugGGCCccucgcaccucGAGCCUCAGCGg -3' miRNA: 3'- ugUGCACU--UugCCGG-----------CUCGGGGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 39390 | 0.75 | 0.301705 |
Target: 5'- -gGCGgcccuGGCGGCgaccCGAGCCCCAGCGg -3' miRNA: 3'- ugUGCacu--UUGCCG----GCUCGGGGUCGC- -5' |
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23836 | 3' | -58.4 | NC_005261.1 | + | 90204 | 0.75 | 0.308665 |
Target: 5'- aGCGCG-GggGCGGCgGAGCgCCCucgcGCGg -3' miRNA: 3'- -UGUGCaCuuUGCCGgCUCG-GGGu---CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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