miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23837 5' -55.9 NC_005261.1 + 130475 0.68 0.763748
Target:  5'- gGCUCGcGGCGugccUCGGCGGCGAGGGc-- -3'
miRNA:   3'- aUGAGU-CUGC----AGUCGCUGUUCCCcga -5'
23837 5' -55.9 NC_005261.1 + 130238 0.71 0.589829
Target:  5'- cGCUCAGGCGccgcgcCAGCGGCucguacugcGGGGCg -3'
miRNA:   3'- aUGAGUCUGCa-----GUCGCUGuu-------CCCCGa -5'
23837 5' -55.9 NC_005261.1 + 129647 0.68 0.782815
Target:  5'- aACgguGGCGgCGGCGGCGgcAGGGGCg -3'
miRNA:   3'- aUGaguCUGCaGUCGCUGU--UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 127630 0.71 0.62102
Target:  5'- gGC-CGGACGcgacggCGGCGGCGccgGGGGGCg -3'
miRNA:   3'- aUGaGUCUGCa-----GUCGCUGU---UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 115635 0.66 0.883004
Target:  5'- aGCgCAG-CGUCGGgGGgaaGAGGGGCg -3'
miRNA:   3'- aUGaGUCuGCAGUCgCUg--UUCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 110222 0.68 0.792143
Target:  5'- -cCUCGGcgacgccuccaGCGUgGGCGGCGcggcgcccgGGGGGCUg -3'
miRNA:   3'- auGAGUC-----------UGCAgUCGCUGU---------UCCCCGA- -5'
23837 5' -55.9 NC_005261.1 + 101418 0.68 0.792143
Target:  5'- uUGCgUCAcGACGUCGGcCGcCGAGGcGGCg -3'
miRNA:   3'- -AUG-AGU-CUGCAGUC-GCuGUUCC-CCGa -5'
23837 5' -55.9 NC_005261.1 + 98916 0.67 0.827868
Target:  5'- gGgUCGGcgGgGUCGGCuGCGGGGGGCa -3'
miRNA:   3'- aUgAGUC--UgCAGUCGcUGUUCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 98288 0.66 0.852753
Target:  5'- cGCcCGGcGCGUCcGCGGCcucGGGGGCg -3'
miRNA:   3'- aUGaGUC-UGCAGuCGCUGu--UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 98138 0.69 0.724235
Target:  5'- cACcggCGGcCGUCGGCGGCAAGGccgcgGGCg -3'
miRNA:   3'- aUGa--GUCuGCAGUCGCUGUUCC-----CCGa -5'
23837 5' -55.9 NC_005261.1 + 95722 0.71 0.596051
Target:  5'- cGCUCGGgcccgccGCGcUCAGCGGCGccgccgccgccgccGGGGGCg -3'
miRNA:   3'- aUGAGUC-------UGC-AGUCGCUGU--------------UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 94281 0.69 0.718179
Target:  5'- gGCUCuuGGCGcagagcauggcguagUCGGCGACccaGGGGGGCg -3'
miRNA:   3'- aUGAGu-CUGC---------------AGUCGCUG---UUCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 90067 0.67 0.836358
Target:  5'- gGCgccccgCGGGCGccgagggCAGCGACG-GGGGCc -3'
miRNA:   3'- aUGa-----GUCUGCa------GUCGCUGUuCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 88801 0.71 0.631445
Target:  5'- cGCgcagcaGGACGcCGGCGGCGGGGcGGCg -3'
miRNA:   3'- aUGag----UCUGCaGUCGCUGUUCC-CCGa -5'
23837 5' -55.9 NC_005261.1 + 81338 0.68 0.754027
Target:  5'- --gUCGGGgcCGUCGGCGgggcgggggcuuGCGGGGGGCg -3'
miRNA:   3'- augAGUCU--GCAGUCGC------------UGUUCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 80875 0.68 0.782815
Target:  5'- cGCUCAGcCGcgcgggcuUCAGCGGCGccucccAGGGGUc -3'
miRNA:   3'- aUGAGUCuGC--------AGUCGCUGU------UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 74342 0.75 0.396838
Target:  5'- gACcgCAGGCG-CGGCGGCGgaAGGGGCg -3'
miRNA:   3'- aUGa-GUCUGCaGUCGCUGU--UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 70578 0.68 0.791217
Target:  5'- aGCUCGGGCGcgagcgCAGCGGCGugcgcccgcccgaAGaGGGCc -3'
miRNA:   3'- aUGAGUCUGCa-----GUCGCUGU-------------UC-CCCGa -5'
23837 5' -55.9 NC_005261.1 + 63967 0.67 0.836358
Target:  5'- aGCUgGuGCGUCAGCGcCAGcGGGCUc -3'
miRNA:   3'- aUGAgUcUGCAGUCGCuGUUcCCCGA- -5'
23837 5' -55.9 NC_005261.1 + 59776 0.72 0.558923
Target:  5'- gUGCUCGGcCG-CAGCGACGgcGGcGGGCg -3'
miRNA:   3'- -AUGAGUCuGCaGUCGCUGU--UC-CCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.