miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23838 5' -58 NC_005261.1 + 102272 0.73 0.366023
Target:  5'- cGCCCggucGGccuGCCGCGCCAGCGgccgcgGGUCGu -3'
miRNA:   3'- -UGGGa---CC---UGGUGCGGUUGCa-----CCAGUu -5'
23838 5' -58 NC_005261.1 + 40028 0.72 0.425423
Target:  5'- gGCCCgcagucGACCGCGaCCAGCGUGG-CGAc -3'
miRNA:   3'- -UGGGac----CUGGUGC-GGUUGCACCaGUU- -5'
23838 5' -58 NC_005261.1 + 21370 0.72 0.434368
Target:  5'- aGCCCU-GACCGCGCCGgagGCGcGGUCc- -3'
miRNA:   3'- -UGGGAcCUGGUGCGGU---UGCaCCAGuu -5'
23838 5' -58 NC_005261.1 + 88856 0.71 0.509549
Target:  5'- -aCCUGGGCCGCGCCucGCG-GGaCAGc -3'
miRNA:   3'- ugGGACCUGGUGCGGu-UGCaCCaGUU- -5'
23838 5' -58 NC_005261.1 + 90729 0.71 0.509549
Target:  5'- gACCgCUGGGCCGCGCCugagGCGcUGGcgCGGg -3'
miRNA:   3'- -UGG-GACCUGGUGCGGu---UGC-ACCa-GUU- -5'
23838 5' -58 NC_005261.1 + 86894 0.7 0.539148
Target:  5'- cGCCCUGGuCCGCGCgCGGCGcGGa--- -3'
miRNA:   3'- -UGGGACCuGGUGCG-GUUGCaCCaguu -5'
23838 5' -58 NC_005261.1 + 130997 0.69 0.58965
Target:  5'- gACCCUGGugCugGCCAcgcgcuucuACGUGuUCc- -3'
miRNA:   3'- -UGGGACCugGugCGGU---------UGCACcAGuu -5'
23838 5' -58 NC_005261.1 + 130430 0.69 0.58965
Target:  5'- aGCCC-GGccGCgGCGCCuACGUGGUCu- -3'
miRNA:   3'- -UGGGaCC--UGgUGCGGuUGCACCAGuu -5'
23838 5' -58 NC_005261.1 + 110680 0.69 0.59987
Target:  5'- aGCgCCUGGAgcacgagggcuuCCGCGCCcACGUGGcCGu -3'
miRNA:   3'- -UG-GGACCU------------GGUGCGGuUGCACCaGUu -5'
23838 5' -58 NC_005261.1 + 113026 0.69 0.59987
Target:  5'- uACCCcacagagcGGGCCGCGCgCGGCGUGG-CGc -3'
miRNA:   3'- -UGGGa-------CCUGGUGCG-GUUGCACCaGUu -5'
23838 5' -58 NC_005261.1 + 118687 0.69 0.610115
Target:  5'- gGCgCUGG-CgCACGCgCGGCGUGGUCc- -3'
miRNA:   3'- -UGgGACCuG-GUGCG-GUUGCACCAGuu -5'
23838 5' -58 NC_005261.1 + 19660 0.69 0.620376
Target:  5'- gGCCUUcagcuuGACCACGUUGGCGUGGUCc- -3'
miRNA:   3'- -UGGGAc-----CUGGUGCGGUUGCACCAGuu -5'
23838 5' -58 NC_005261.1 + 120215 0.69 0.630646
Target:  5'- uUCCUGGuuCCagaGCGCCGACGUGGa--- -3'
miRNA:   3'- uGGGACCu-GG---UGCGGUUGCACCaguu -5'
23838 5' -58 NC_005261.1 + 113556 0.69 0.630646
Target:  5'- cGCgCUGGACCGCGagca-GUGGUCGGu -3'
miRNA:   3'- -UGgGACCUGGUGCgguugCACCAGUU- -5'
23838 5' -58 NC_005261.1 + 83854 0.68 0.640917
Target:  5'- gGCCCcgcugggcUGGGCCGgGCCGgACGccgGGUCAGc -3'
miRNA:   3'- -UGGG--------ACCUGGUgCGGU-UGCa--CCAGUU- -5'
23838 5' -58 NC_005261.1 + 95194 0.68 0.660406
Target:  5'- aGCCCUGGGacCCGCGCCGcccgcccGCGcGGUg-- -3'
miRNA:   3'- -UGGGACCU--GGUGCGGU-------UGCaCCAguu -5'
23838 5' -58 NC_005261.1 + 18201 0.68 0.671655
Target:  5'- cCCCaGGGCCGCGCCGAUcccccGGUCc- -3'
miRNA:   3'- uGGGaCCUGGUGCGGUUGca---CCAGuu -5'
23838 5' -58 NC_005261.1 + 94680 0.68 0.681848
Target:  5'- cCCCUGaGGCgCugGCCAccgaggACGUGGcCGAg -3'
miRNA:   3'- uGGGAC-CUG-GugCGGU------UGCACCaGUU- -5'
23838 5' -58 NC_005261.1 + 19555 0.68 0.681848
Target:  5'- cGCCgUGGGgaGCGCCAGCGggcGGUUGAu -3'
miRNA:   3'- -UGGgACCUggUGCGGUUGCa--CCAGUU- -5'
23838 5' -58 NC_005261.1 + 114040 0.68 0.691999
Target:  5'- cCCCUggcGGACgACGCCAaggACGUGGcgCGg -3'
miRNA:   3'- uGGGA---CCUGgUGCGGU---UGCACCa-GUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.