Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23838 | 5' | -58 | NC_005261.1 | + | 18201 | 0.68 | 0.671655 |
Target: 5'- cCCCaGGGCCGCGCCGAUcccccGGUCc- -3' miRNA: 3'- uGGGaCCUGGUGCGGUUGca---CCAGuu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 19555 | 0.68 | 0.681848 |
Target: 5'- cGCCgUGGGgaGCGCCAGCGggcGGUUGAu -3' miRNA: 3'- -UGGgACCUggUGCGGUUGCa--CCAGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 19660 | 0.69 | 0.620376 |
Target: 5'- gGCCUUcagcuuGACCACGUUGGCGUGGUCc- -3' miRNA: 3'- -UGGGAc-----CUGGUGCGGUUGCACCAGuu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 21370 | 0.72 | 0.434368 |
Target: 5'- aGCCCU-GACCGCGCCGgagGCGcGGUCc- -3' miRNA: 3'- -UGGGAcCUGGUGCGGU---UGCaCCAGuu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 26655 | 0.66 | 0.770628 |
Target: 5'- cCCCUGGGCCacACGCCcgGACGcggagGGUaCAc -3' miRNA: 3'- uGGGACCUGG--UGCGG--UUGCa----CCA-GUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 27294 | 0.67 | 0.702101 |
Target: 5'- cGCCCUcgcgagcaGGCCGgGCCAACGcgcgcgGGUCAAg -3' miRNA: 3'- -UGGGAc-------CUGGUgCGGUUGCa-----CCAGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 31630 | 0.66 | 0.798318 |
Target: 5'- gACgCgGGACCugGCCuuccgcGGCGcGGUCGAg -3' miRNA: 3'- -UGgGaCCUGGugCGG------UUGCaCCAGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 31929 | 0.66 | 0.770628 |
Target: 5'- cGCCgCUGGGCUcugccgcgGCGCCAACGUGc---- -3' miRNA: 3'- -UGG-GACCUGG--------UGCGGUUGCACcaguu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 40028 | 0.72 | 0.425423 |
Target: 5'- gGCCCgcagucGACCGCGaCCAGCGUGG-CGAc -3' miRNA: 3'- -UGGGac----CUGGUGC-GGUUGCACCaGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 40487 | 0.66 | 0.798318 |
Target: 5'- gGCCCUGGGa---GCgGGCGaUGGUCAu -3' miRNA: 3'- -UGGGACCUggugCGgUUGC-ACCAGUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 46113 | 0.66 | 0.789227 |
Target: 5'- gGCCgUGGuCCGCGuCCAGCa-GGUCGc -3' miRNA: 3'- -UGGgACCuGGUGC-GGUUGcaCCAGUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 50942 | 0.67 | 0.732011 |
Target: 5'- cCCCUGcuuCUACGCgGcCGUGGUCGAc -3' miRNA: 3'- uGGGACcu-GGUGCGgUuGCACCAGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 58548 | 0.66 | 0.779995 |
Target: 5'- cGCCC-GGGCUccuGCGCCGuCGUGGcCGc -3' miRNA: 3'- -UGGGaCCUGG---UGCGGUuGCACCaGUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 59480 | 0.66 | 0.807257 |
Target: 5'- aGCgCCggcgcGGccGCCGCGCCAGCGgcggcGGUCGc -3' miRNA: 3'- -UG-GGa----CC--UGGUGCGGUUGCa----CCAGUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 73477 | 0.66 | 0.779995 |
Target: 5'- cCCCUGGGCCgcggcgcggcGCGCgGACGcGG-CGAg -3' miRNA: 3'- uGGGACCUGG----------UGCGgUUGCaCCaGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 76011 | 0.66 | 0.80637 |
Target: 5'- cGCCCUGGcgccgcgcagcGCCgcgggcgccccgcGCGCCAucaGCGUGGcCGg -3' miRNA: 3'- -UGGGACC-----------UGG-------------UGCGGU---UGCACCaGUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 77635 | 0.68 | 0.691999 |
Target: 5'- gGCCCUGGccggcGCCAuCGCCGACGgccGG-CGc -3' miRNA: 3'- -UGGGACC-----UGGU-GCGGUUGCa--CCaGUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 78182 | 0.67 | 0.74182 |
Target: 5'- aGCCCgGGGCCAuUGCCAcUGUGGaCGc -3' miRNA: 3'- -UGGGaCCUGGU-GCGGUuGCACCaGUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 83854 | 0.68 | 0.640917 |
Target: 5'- gGCCCcgcugggcUGGGCCGgGCCGgACGccgGGUCAGc -3' miRNA: 3'- -UGGG--------ACCUGGUgCGGU-UGCa--CCAGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 84300 | 0.66 | 0.807257 |
Target: 5'- gGCCCcGG-CgGCGCCGaagGCGUaGGUCGc -3' miRNA: 3'- -UGGGaCCuGgUGCGGU---UGCA-CCAGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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