Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23838 | 5' | -58 | NC_005261.1 | + | 84300 | 0.66 | 0.807257 |
Target: 5'- gGCCCcGG-CgGCGCCGaagGCGUaGGUCGc -3' miRNA: 3'- -UGGGaCCuGgUGCGGU---UGCA-CCAGUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 120215 | 0.69 | 0.630646 |
Target: 5'- uUCCUGGuuCCagaGCGCCGACGUGGa--- -3' miRNA: 3'- uGGGACCu-GG---UGCGGUUGCACCaguu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 113556 | 0.69 | 0.630646 |
Target: 5'- cGCgCUGGACCGCGagca-GUGGUCGGu -3' miRNA: 3'- -UGgGACCUGGUGCgguugCACCAGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 83854 | 0.68 | 0.640917 |
Target: 5'- gGCCCcgcugggcUGGGCCGgGCCGgACGccgGGUCAGc -3' miRNA: 3'- -UGGG--------ACCUGGUgCGGU-UGCa--CCAGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 95194 | 0.68 | 0.660406 |
Target: 5'- aGCCCUGGGacCCGCGCCGcccgcccGCGcGGUg-- -3' miRNA: 3'- -UGGGACCU--GGUGCGGU-------UGCaCCAguu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 18201 | 0.68 | 0.671655 |
Target: 5'- cCCCaGGGCCGCGCCGAUcccccGGUCc- -3' miRNA: 3'- uGGGaCCUGGUGCGGUUGca---CCAGuu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 94680 | 0.68 | 0.681848 |
Target: 5'- cCCCUGaGGCgCugGCCAccgaggACGUGGcCGAg -3' miRNA: 3'- uGGGAC-CUG-GugCGGU------UGCACCaGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 19555 | 0.68 | 0.681848 |
Target: 5'- cGCCgUGGGgaGCGCCAGCGggcGGUUGAu -3' miRNA: 3'- -UGGgACCUggUGCGGUUGCa--CCAGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 77635 | 0.68 | 0.691999 |
Target: 5'- gGCCCUGGccggcGCCAuCGCCGACGgccGG-CGc -3' miRNA: 3'- -UGGGACC-----UGGU-GCGGUUGCa--CCaGUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 19660 | 0.69 | 0.620376 |
Target: 5'- gGCCUUcagcuuGACCACGUUGGCGUGGUCc- -3' miRNA: 3'- -UGGGAc-----CUGGUGCGGUUGCACCAGuu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 118687 | 0.69 | 0.610115 |
Target: 5'- gGCgCUGG-CgCACGCgCGGCGUGGUCc- -3' miRNA: 3'- -UGgGACCuG-GUGCG-GUUGCACCAGuu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 113026 | 0.69 | 0.59987 |
Target: 5'- uACCCcacagagcGGGCCGCGCgCGGCGUGG-CGc -3' miRNA: 3'- -UGGGa-------CCUGGUGCG-GUUGCACCaGUu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 40028 | 0.72 | 0.425423 |
Target: 5'- gGCCCgcagucGACCGCGaCCAGCGUGG-CGAc -3' miRNA: 3'- -UGGGac----CUGGUGC-GGUUGCACCaGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 21370 | 0.72 | 0.434368 |
Target: 5'- aGCCCU-GACCGCGCCGgagGCGcGGUCc- -3' miRNA: 3'- -UGGGAcCUGGUGCGGU---UGCaCCAGuu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 88856 | 0.71 | 0.509549 |
Target: 5'- -aCCUGGGCCGCGCCucGCG-GGaCAGc -3' miRNA: 3'- ugGGACCUGGUGCGGu-UGCaCCaGUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 90729 | 0.71 | 0.509549 |
Target: 5'- gACCgCUGGGCCGCGCCugagGCGcUGGcgCGGg -3' miRNA: 3'- -UGG-GACCUGGUGCGGu---UGC-ACCa-GUU- -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 86894 | 0.7 | 0.539148 |
Target: 5'- cGCCCUGGuCCGCGCgCGGCGcGGa--- -3' miRNA: 3'- -UGGGACCuGGUGCG-GUUGCaCCaguu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 130997 | 0.69 | 0.58965 |
Target: 5'- gACCCUGGugCugGCCAcgcgcuucuACGUGuUCc- -3' miRNA: 3'- -UGGGACCugGugCGGU---------UGCACcAGuu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 130430 | 0.69 | 0.58965 |
Target: 5'- aGCCC-GGccGCgGCGCCuACGUGGUCu- -3' miRNA: 3'- -UGGGaCC--UGgUGCGGuUGCACCAGuu -5' |
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23838 | 5' | -58 | NC_005261.1 | + | 110680 | 0.69 | 0.59987 |
Target: 5'- aGCgCCUGGAgcacgagggcuuCCGCGCCcACGUGGcCGu -3' miRNA: 3'- -UG-GGACCU------------GGUGCGGuUGCACCaGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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