miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 3' -57.6 NC_005261.1 + 2116 0.66 0.806459
Target:  5'- ----aGCAcGCCCUGCGcgCCgagcGCGCUCa -3'
miRNA:   3'- gaggaCGUuCGGGACGUa-GG----UGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 79411 0.66 0.797429
Target:  5'- gUCgaGCAGGCCC-GUGUCgGCgaGCUCg -3'
miRNA:   3'- gAGgaCGUUCGGGaCGUAGgUG--CGAG- -5'
23840 3' -57.6 NC_005261.1 + 110416 0.66 0.797429
Target:  5'- -gCCUGCAGGCCaugauccgCUGCca-CGCGUUCc -3'
miRNA:   3'- gaGGACGUUCGG--------GACGuagGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 58885 0.66 0.797429
Target:  5'- gUCCggGCGGGCCUcGCAggCGCGCg- -3'
miRNA:   3'- gAGGa-CGUUCGGGaCGUagGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 73112 0.66 0.797429
Target:  5'- -gCCaGaAAGCCC-GCGUCCGCGCg- -3'
miRNA:   3'- gaGGaCgUUCGGGaCGUAGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 118952 0.66 0.797429
Target:  5'- -gCCgcgGCGcacguggccaaGGUCCUGCAcgCCGCGCUg -3'
miRNA:   3'- gaGGa--CGU-----------UCGGGACGUa-GGUGCGAg -5'
23840 3' -57.6 NC_005261.1 + 4170 0.66 0.778919
Target:  5'- --gCUGCAGGUCCgggcccGCGagcUUCGCGCUCu -3'
miRNA:   3'- gagGACGUUCGGGa-----CGU---AGGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 77501 0.66 0.778919
Target:  5'- uUCCUGCc-GCCCgccaucGCcgCCGCGCc- -3'
miRNA:   3'- gAGGACGuuCGGGa-----CGuaGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 115898 0.66 0.776094
Target:  5'- cCUCCUccccgccgucgucaGCGccGGCCgCcGCGUCCGCGCg- -3'
miRNA:   3'- -GAGGA--------------CGU--UCGG-GaCGUAGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 33567 0.66 0.769457
Target:  5'- aCUCC-GCcAGCCCUGCcagCCcCGCg- -3'
miRNA:   3'- -GAGGaCGuUCGGGACGua-GGuGCGag -5'
23840 3' -57.6 NC_005261.1 + 133614 0.67 0.759869
Target:  5'- -aCCUcGCGcuGGCgCUGUGggCCGCGCUCg -3'
miRNA:   3'- gaGGA-CGU--UCGgGACGUa-GGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 65391 0.67 0.759869
Target:  5'- -aCCUGCGgcggguugggcGGCCCcgGCAgcUCCACGUcCg -3'
miRNA:   3'- gaGGACGU-----------UCGGGa-CGU--AGGUGCGaG- -5'
23840 3' -57.6 NC_005261.1 + 30879 0.67 0.759869
Target:  5'- -gCC-GCcGGCCCUGCcgCCcgaGCUCg -3'
miRNA:   3'- gaGGaCGuUCGGGACGuaGGug-CGAG- -5'
23840 3' -57.6 NC_005261.1 + 31241 0.67 0.740356
Target:  5'- uUCCc-CGAGCCCUgGCGcCCgGCGCUCg -3'
miRNA:   3'- gAGGacGUUCGGGA-CGUaGG-UGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 29754 0.67 0.73045
Target:  5'- cCUCCUGCAgAG-CCUGCGg-CGCGCg- -3'
miRNA:   3'- -GAGGACGU-UCgGGACGUagGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 64397 0.67 0.73045
Target:  5'- cCUCCUGCAgcaccagcAGCgCgucgGCGUCCACcGC-Ca -3'
miRNA:   3'- -GAGGACGU--------UCGgGa---CGUAGGUG-CGaG- -5'
23840 3' -57.6 NC_005261.1 + 120626 0.67 0.73045
Target:  5'- gCUCCUGCugguggcGGCCCUGUGccugCgGCGCa- -3'
miRNA:   3'- -GAGGACGu------UCGGGACGUa---GgUGCGag -5'
23840 3' -57.6 NC_005261.1 + 122584 0.67 0.720456
Target:  5'- gCUCCgccGCAgcGGCCUUGUAcgCCGCGUUg -3'
miRNA:   3'- -GAGGa--CGU--UCGGGACGUa-GGUGCGAg -5'
23840 3' -57.6 NC_005261.1 + 118191 0.67 0.720456
Target:  5'- -gCC-GCGGGCCCcGCGccugCCGCGCUg -3'
miRNA:   3'- gaGGaCGUUCGGGaCGUa---GGUGCGAg -5'
23840 3' -57.6 NC_005261.1 + 83145 0.67 0.710385
Target:  5'- -cCCUGCAGGUgCgGCAgguaCugGCUCa -3'
miRNA:   3'- gaGGACGUUCGgGaCGUag--GugCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.