Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23841 | 3' | -60.6 | NC_005261.1 | + | 88145 | 0.71 | 0.402164 |
Target: 5'- cCGcGCggggGCGCCCCGGCCgcgcagccgggccgGgGCGACGc -3' miRNA: 3'- -GCaCGa---CGCGGGGCCGGa-------------CaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 86102 | 0.68 | 0.573767 |
Target: 5'- uCGU-CgGCGCCCgGGCgucggagcgcgCUGUACGACGc -3' miRNA: 3'- -GCAcGaCGCGGGgCCG-----------GACAUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 85032 | 0.69 | 0.50592 |
Target: 5'- --cGCcGCGCCCCGGCC---ACGAUc -3' miRNA: 3'- gcaCGaCGCGGGGCCGGacaUGCUGu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 84282 | 0.72 | 0.32866 |
Target: 5'- gGUGCcgccgGCgGCCCCGGCCccgGCGGCGc -3' miRNA: 3'- gCACGa----CG-CGGGGCCGGacaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 81061 | 0.66 | 0.653487 |
Target: 5'- aCGUGCUGCccGCCCaGGUCgugGUcACGAUc -3' miRNA: 3'- -GCACGACG--CGGGgCCGGa--CA-UGCUGu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 77575 | 0.7 | 0.450634 |
Target: 5'- --cGCcGCGCCCUGGCaccccggGUACGGCu -3' miRNA: 3'- gcaCGaCGCGGGGCCGga-----CAUGCUGu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 77521 | 0.66 | 0.650493 |
Target: 5'- --cGCcGCGCCCCcgcccccgaugccgGGCUgGUACGGCGc -3' miRNA: 3'- gcaCGaCGCGGGG--------------CCGGaCAUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 76920 | 0.68 | 0.538512 |
Target: 5'- gCGUGCUGgGCCgCCGcGUCgggaccaucguuacGUACGACGc -3' miRNA: 3'- -GCACGACgCGG-GGC-CGGa-------------CAUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 76672 | 0.69 | 0.477883 |
Target: 5'- cCGUGCUG-GCCCUcGCCg--ACGACGa -3' miRNA: 3'- -GCACGACgCGGGGcCGGacaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 74069 | 0.73 | 0.306697 |
Target: 5'- --aGCUGCGCgacgcggCCCGGCUUGUGCG-CGa -3' miRNA: 3'- gcaCGACGCG-------GGGCCGGACAUGCuGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 72445 | 0.67 | 0.593591 |
Target: 5'- cCG-GCggggGCGCCCgCGGCgaGcGCGGCGa -3' miRNA: 3'- -GCaCGa---CGCGGG-GCCGgaCaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 71900 | 0.69 | 0.515423 |
Target: 5'- aGUGCUccGCGCCgCCGGCCaGcACGuCGu -3' miRNA: 3'- gCACGA--CGCGG-GGCCGGaCaUGCuGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 64057 | 0.66 | 0.673402 |
Target: 5'- gCGUGgUGCGCCaCCGGCUgccGcACGGu- -3' miRNA: 3'- -GCACgACGCGG-GGCCGGa--CaUGCUgu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 63380 | 0.66 | 0.683316 |
Target: 5'- uGUGCcggGuCGCCCUGGCCgugGU-CGaACAu -3' miRNA: 3'- gCACGa--C-GCGGGGCCGGa--CAuGC-UGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 53712 | 0.66 | 0.703013 |
Target: 5'- --cGC-GCGCCgCGGCCaGcUGCGGCGc -3' miRNA: 3'- gcaCGaCGCGGgGCCGGaC-AUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 53538 | 0.68 | 0.534638 |
Target: 5'- cCGUGUUGCGCUcuUCGGCCgcgccGCGGCc -3' miRNA: 3'- -GCACGACGCGG--GGCCGGaca--UGCUGu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 52226 | 0.67 | 0.643501 |
Target: 5'- --cGCgGCGCUgCGGCCgGUACGGu- -3' miRNA: 3'- gcaCGaCGCGGgGCCGGaCAUGCUgu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 46569 | 0.67 | 0.623511 |
Target: 5'- gCGcUGCUGCGagCgCGGCCUcGcGCGACAc -3' miRNA: 3'- -GC-ACGACGCg-GgGCCGGA-CaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 46272 | 0.67 | 0.633507 |
Target: 5'- cCGUGUccccgggGCGCUCUGGCCgGgcaACGGCGc -3' miRNA: 3'- -GCACGa------CGCGGGGCCGGaCa--UGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 44581 | 0.7 | 0.432949 |
Target: 5'- cCGUGCUGCGCgUCCGGCgCUu--CGGCu -3' miRNA: 3'- -GCACGACGCG-GGGCCG-GAcauGCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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