Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23841 | 5' | -55.9 | NC_005261.1 | + | 51062 | 0.67 | 0.826986 |
Target: 5'- cACGgcgGCUUUCUcGGCguacACGGCCCu -3' miRNA: 3'- aUGCagaUGAAGGAcCCGa---UGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 3656 | 0.67 | 0.818361 |
Target: 5'- cGCGUCUggagcgcaggccGCggCCggcaGGCcGCGGCCCg -3' miRNA: 3'- aUGCAGA------------UGaaGGac--CCGaUGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 4844 | 0.67 | 0.818361 |
Target: 5'- gGCGUCcGCgccgcagCCUcaaGGGCgGCGGCCa -3' miRNA: 3'- aUGCAGaUGaa-----GGA---CCCGaUGCCGGg -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 7647 | 0.67 | 0.817488 |
Target: 5'- cGCGUCUGCUuuucgcuUCaaGcGGCcGCGGCCg -3' miRNA: 3'- aUGCAGAUGA-------AGgaC-CCGaUGCCGGg -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 68812 | 0.68 | 0.772816 |
Target: 5'- cGCGgacCcACaacgCCUGGGCcgugGCGGCCCc -3' miRNA: 3'- aUGCa--GaUGaa--GGACCCGa---UGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 25150 | 0.68 | 0.772816 |
Target: 5'- aGCGUCcucACUUCCcGGG--GCGGCCg -3' miRNA: 3'- aUGCAGa--UGAAGGaCCCgaUGCCGGg -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 96748 | 0.68 | 0.772816 |
Target: 5'- --aGUCc-CggCCUGGGCcGCGGCCUu -3' miRNA: 3'- augCAGauGaaGGACCCGaUGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 111602 | 0.69 | 0.763286 |
Target: 5'- cGCGgaguggGCgcggCUGGGCUGCGGCgCCg -3' miRNA: 3'- aUGCaga---UGaag-GACCCGAUGCCG-GG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 90876 | 0.69 | 0.753636 |
Target: 5'- -cCGUCUGCgcgCUGGGCgACGGCa- -3' miRNA: 3'- auGCAGAUGaagGACCCGaUGCCGgg -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 118909 | 0.69 | 0.743877 |
Target: 5'- cUGCGUCUGggUCCggcgccgcGGGC-GCGGCgCCg -3' miRNA: 3'- -AUGCAGAUgaAGGa-------CCCGaUGCCG-GG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 62293 | 0.69 | 0.734018 |
Target: 5'- cACGUCgGCg-CCgcgcGGGCgcgcgGCGGCCCc -3' miRNA: 3'- aUGCAGaUGaaGGa---CCCGa----UGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 94860 | 0.69 | 0.71404 |
Target: 5'- gGCGcUCgcgcACggCCcGGGCggGCGGCCCg -3' miRNA: 3'- aUGC-AGa---UGaaGGaCCCGa-UGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 115414 | 0.7 | 0.693775 |
Target: 5'- cGCGggcgGCagCCgGGGCcGCGGCCCg -3' miRNA: 3'- aUGCaga-UGaaGGaCCCGaUGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 88846 | 0.7 | 0.683559 |
Target: 5'- gGCGUCgGCUaCCUGGGCcGC-GCCUc -3' miRNA: 3'- aUGCAGaUGAaGGACCCGaUGcCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 16036 | 0.7 | 0.683559 |
Target: 5'- aGCuUCUucgcCUUCUUGGGCaGCGGgCCCg -3' miRNA: 3'- aUGcAGAu---GAAGGACCCGaUGCC-GGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 104671 | 0.71 | 0.652688 |
Target: 5'- gGCGUgUGCUgcggcagcgCCUGGGCcACcGCCCc -3' miRNA: 3'- aUGCAgAUGAa--------GGACCCGaUGcCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 73462 | 0.71 | 0.642352 |
Target: 5'- cGCGUCcGCgcgcccccCCUGGGCcGCGGCgCg -3' miRNA: 3'- aUGCAGaUGaa------GGACCCGaUGCCGgG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 4810 | 0.71 | 0.620631 |
Target: 5'- gGCGUCaACUUCCuccgcguUGGGCgcagGCGGCg- -3' miRNA: 3'- aUGCAGaUGAAGG-------ACCCGa---UGCCGgg -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 99569 | 0.71 | 0.611329 |
Target: 5'- gGCGUCguaGCU--CUGGGcCUGCGcGCCCa -3' miRNA: 3'- aUGCAGa--UGAagGACCC-GAUGC-CGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 120408 | 0.74 | 0.461947 |
Target: 5'- gGCGUCUGCgcugagcggCCUGGGCUggugaacaugcGCGGCg- -3' miRNA: 3'- aUGCAGAUGaa-------GGACCCGA-----------UGCCGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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