Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23843 | 3' | -52.3 | NC_005261.1 | + | 75078 | 0.66 | 0.984833 |
Target: 5'- cCGGCGGGGGCucggcgGGCAUcGUcUUCGGGACc -3' miRNA: 3'- -GCUGCUCUCG------CUGUA-CA-AGGCCUUGc -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 88145 | 0.66 | 0.984833 |
Target: 5'- cCGcGCGGGGGCGccccggccgcGCAgccGggCCGGGGCGa -3' miRNA: 3'- -GC-UGCUCUCGC----------UGUa--CaaGGCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 97706 | 0.66 | 0.982955 |
Target: 5'- gGugGGGAGaCGGCggGUggcCCGG-GCGg -3' miRNA: 3'- gCugCUCUC-GCUGuaCAa--GGCCuUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 10589 | 0.66 | 0.982955 |
Target: 5'- gCGACGuGAGCGGCAgcgacUCCaGcAGCGa -3' miRNA: 3'- -GCUGCuCUCGCUGUaca--AGGcC-UUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 30084 | 0.66 | 0.980907 |
Target: 5'- gCGGCGcacccGGAGCG-CGUGcUCCGGGcaGCu -3' miRNA: 3'- -GCUGC-----UCUCGCuGUACaAGGCCU--UGc -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 32919 | 0.66 | 0.97868 |
Target: 5'- gCGugGGGGGCGGCGggcgGggggGGGGCGg -3' miRNA: 3'- -GCugCUCUCGCUGUa---CaaggCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 51011 | 0.67 | 0.977255 |
Target: 5'- gCGGCGGGAGCucGGCGagcgccacccggcgcUGUUCCuGGAGgCGc -3' miRNA: 3'- -GCUGCUCUCG--CUGU---------------ACAAGG-CCUU-GC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 59792 | 0.67 | 0.976267 |
Target: 5'- aCGGCGGcGGGCGGCAgg--CCGGcgUGg -3' miRNA: 3'- -GCUGCU-CUCGCUGUacaaGGCCuuGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 92695 | 0.67 | 0.976267 |
Target: 5'- gCGAgCGGGAGCGGgAgcgGgagCgGGAGCGg -3' miRNA: 3'- -GCU-GCUCUCGCUgUa--Caa-GgCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 114303 | 0.67 | 0.97366 |
Target: 5'- gGACGccuuGAGCGACccGgcagUCCGGcGCa -3' miRNA: 3'- gCUGCu---CUCGCUGuaCa---AGGCCuUGc -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 32388 | 0.67 | 0.97085 |
Target: 5'- gCGGCGc-GGCGGCGUc--CCGGAGCGc -3' miRNA: 3'- -GCUGCucUCGCUGUAcaaGGCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 56043 | 0.67 | 0.97085 |
Target: 5'- uGACGcgcgcGAGCGA--UGUUCgGGGGCGc -3' miRNA: 3'- gCUGCu----CUCGCUguACAAGgCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 5402 | 0.67 | 0.964599 |
Target: 5'- -aGCGAGAGCG-CggGcgCCGcGAACGa -3' miRNA: 3'- gcUGCUCUCGCuGuaCaaGGC-CUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 33609 | 0.67 | 0.964599 |
Target: 5'- cCGGCGcGGGCGGCggGgcCCGGGggcGCGc -3' miRNA: 3'- -GCUGCuCUCGCUGuaCaaGGCCU---UGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 75402 | 0.68 | 0.961145 |
Target: 5'- uCGACGAGGGCG-CGgc--CCGGcGCGu -3' miRNA: 3'- -GCUGCUCUCGCuGUacaaGGCCuUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 114557 | 0.68 | 0.957465 |
Target: 5'- uCGGCgGGGAGCGGCcgccgCCGGAucGCGu -3' miRNA: 3'- -GCUG-CUCUCGCUGuacaaGGCCU--UGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 17737 | 0.68 | 0.957465 |
Target: 5'- gCGGCGcucGGAGCgGGCGgacUUCUGGGGCGg -3' miRNA: 3'- -GCUGC---UCUCG-CUGUac-AAGGCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 128880 | 0.68 | 0.957465 |
Target: 5'- aCGACGAG-GCGGgGg---CCGGGugGg -3' miRNA: 3'- -GCUGCUCuCGCUgUacaaGGCCUugC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 12064 | 0.68 | 0.945018 |
Target: 5'- cCGGCGgugcGGcAGCGGCGUccGcgCCGGGGCGg -3' miRNA: 3'- -GCUGC----UC-UCGCUGUA--CaaGGCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 125981 | 0.69 | 0.930397 |
Target: 5'- gCGACGGGGGCcgcaACAUGgccUCUGGAGuCGu -3' miRNA: 3'- -GCUGCUCUCGc---UGUACa--AGGCCUU-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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