miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 5' -51.1 NC_005261.1 + 69234 0.66 0.989624
Target:  5'- cGCUggggCGGUUcGCCGAGGcgcUGGCCC-GCg -3'
miRNA:   3'- -CGG----GUCAAaCGGUUCCu--AUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 36825 0.66 0.989486
Target:  5'- cCCCGGUaugcggUGCCGgcgcccgGGGGcUAGCCC-GCg -3'
miRNA:   3'- cGGGUCAa-----ACGGU-------UCCU-AUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 56385 0.66 0.988771
Target:  5'- uCCCAGgagcucgcggggGCCcuGGGc-GCCCUGCg -3'
miRNA:   3'- cGGGUCaaa---------CGGuuCCUauUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 15423 0.66 0.988172
Target:  5'- aGCCCAGagucgGCCGGGcGcgGGCCg-GCg -3'
miRNA:   3'- -CGGGUCaaa--CGGUUC-CuaUUGGgaCG- -5'
23844 5' -51.1 NC_005261.1 + 32333 0.66 0.988172
Target:  5'- cGCCCGGcgugGCCuGGGAcgcgGACCaggGCc -3'
miRNA:   3'- -CGGGUCaaa-CGGuUCCUa---UUGGga-CG- -5'
23844 5' -51.1 NC_005261.1 + 34454 0.66 0.986567
Target:  5'- cGCCgGGgcacggGCCGGGGGccccguaCCUGCg -3'
miRNA:   3'- -CGGgUCaaa---CGGUUCCUauug---GGACG- -5'
23844 5' -51.1 NC_005261.1 + 103074 0.66 0.986567
Target:  5'- cGCCCAGcaccGCCGcgaAGGccgGGCCCaGCc -3'
miRNA:   3'- -CGGGUCaaa-CGGU---UCCua-UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 65337 0.66 0.986567
Target:  5'- gGCaCCGGgaugUUGCCGuugaugacgcgGGGcAUGGCCC-GCa -3'
miRNA:   3'- -CG-GGUCa---AACGGU-----------UCC-UAUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 12732 0.66 0.986567
Target:  5'- gGCCCGccg-GCCcccuGGGcgGGCCCgGCg -3'
miRNA:   3'- -CGGGUcaaaCGGu---UCCuaUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 134718 0.66 0.9848
Target:  5'- cGCCCAGacccgGCCG-GGAcccgGACUCgGCg -3'
miRNA:   3'- -CGGGUCaaa--CGGUuCCUa---UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 72009 0.66 0.9848
Target:  5'- gGCCUuaac-GCCGGGGGcGACgCUGCg -3'
miRNA:   3'- -CGGGucaaaCGGUUCCUaUUGgGACG- -5'
23844 5' -51.1 NC_005261.1 + 44617 0.66 0.9848
Target:  5'- cGCaCCAGgaggcgUGCaggucgGAGGAggAGCUCUGCg -3'
miRNA:   3'- -CG-GGUCaa----ACGg-----UUCCUa-UUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 6230 0.66 0.9848
Target:  5'- gGUCCAGgugcGCCcGGGGaGGgCCUGCc -3'
miRNA:   3'- -CGGGUCaaa-CGGuUCCUaUUgGGACG- -5'
23844 5' -51.1 NC_005261.1 + 74415 0.66 0.982861
Target:  5'- gGCCgCGGgcgggaggGCCGAGGAgagcGCCCccccgGCg -3'
miRNA:   3'- -CGG-GUCaaa-----CGGUUCCUau--UGGGa----CG- -5'
23844 5' -51.1 NC_005261.1 + 48898 0.66 0.982861
Target:  5'- aGCCgCAGUUgGCCucuAGcGcgAGCCCggGCg -3'
miRNA:   3'- -CGG-GUCAAaCGGu--UC-CuaUUGGGa-CG- -5'
23844 5' -51.1 NC_005261.1 + 109249 0.66 0.982861
Target:  5'- gGCCCAGUgcgggGCCAcgaaguccAGcGAgcugAGCCCggacGCg -3'
miRNA:   3'- -CGGGUCAaa---CGGU--------UC-CUa---UUGGGa---CG- -5'
23844 5' -51.1 NC_005261.1 + 63132 0.67 0.980742
Target:  5'- cCCCGGU--GCCGGGGGgcuGCUugaaCUGCa -3'
miRNA:   3'- cGGGUCAaaCGGUUCCUau-UGG----GACG- -5'
23844 5' -51.1 NC_005261.1 + 15924 0.67 0.980742
Target:  5'- -gCCGGg--GCCGGGGccggGGCCCggGCa -3'
miRNA:   3'- cgGGUCaaaCGGUUCCua--UUGGGa-CG- -5'
23844 5' -51.1 NC_005261.1 + 35936 0.67 0.980742
Target:  5'- aGCCCAGcgggcGCCcAGGcccgAGCCCgGCc -3'
miRNA:   3'- -CGGGUCaaa--CGGuUCCua--UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 34158 0.67 0.980742
Target:  5'- cGCCuCGGacgagUGCUucGAGGAgauCCCUGUg -3'
miRNA:   3'- -CGG-GUCaa---ACGG--UUCCUauuGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.