Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23845 | 3' | -51.2 | NC_005261.1 | + | 41888 | 0.66 | 0.988461 |
Target: 5'- cGCgGC-GUACUcgcgcaGCGUGGGGUugGGa -3' miRNA: 3'- cCGgCGaCAUGA------UGUACCUCAugUCg -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 74914 | 0.66 | 0.986895 |
Target: 5'- uGGCCGCgcggGggaggGCgaggACggGGAcUGCGGCg -3' miRNA: 3'- -CCGGCGa---Ca----UGa---UGuaCCUcAUGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 32249 | 0.66 | 0.991153 |
Target: 5'- cGGCCGC---GCUGC-UGGAGccGCAcGCc -3' miRNA: 3'- -CCGGCGacaUGAUGuACCUCa-UGU-CG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 75042 | 0.66 | 0.98328 |
Target: 5'- cGGCCGaccUGCUGgcCAUGGuGUACAccGCg -3' miRNA: 3'- -CCGGCgacAUGAU--GUACCuCAUGU--CG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 81274 | 0.66 | 0.98328 |
Target: 5'- cGGCCGcCUGcGCgagccGGAGcGCGGCg -3' miRNA: 3'- -CCGGC-GACaUGauguaCCUCaUGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 80104 | 0.66 | 0.989877 |
Target: 5'- cGCCGCgGUACcgGCuUGGGcgccgcgGCAGCg -3' miRNA: 3'- cCGGCGaCAUGa-UGuACCUca-----UGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 39065 | 0.66 | 0.986895 |
Target: 5'- aGCCGCgaaaGUACUACAcccgcuccucGGAcgGCGGCa -3' miRNA: 3'- cCGGCGa---CAUGAUGUa---------CCUcaUGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 127495 | 0.66 | 0.98328 |
Target: 5'- uGGCgGCUGc-CUGCcgGGcGUACucGGCg -3' miRNA: 3'- -CCGgCGACauGAUGuaCCuCAUG--UCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 41631 | 0.66 | 0.985171 |
Target: 5'- cGGCCcucgGCgaccuugagGUGC-GCGUGGAG-GCGGCu -3' miRNA: 3'- -CCGG----CGa--------CAUGaUGUACCUCaUGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 1407 | 0.66 | 0.989877 |
Target: 5'- cGGCCGCg--GCgGCGgcGGGG-GCGGCg -3' miRNA: 3'- -CCGGCGacaUGaUGUa-CCUCaUGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 131260 | 0.66 | 0.989877 |
Target: 5'- aGGuCCGCUGc-CUGCGU-GAGUACAu- -3' miRNA: 3'- -CC-GGCGACauGAUGUAcCUCAUGUcg -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 35221 | 0.66 | 0.985171 |
Target: 5'- uGGCgGCUGgaggggACccgGCA-GGAGgagagGCGGCg -3' miRNA: 3'- -CCGgCGACa-----UGa--UGUaCCUCa----UGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 89852 | 0.67 | 0.979882 |
Target: 5'- gGGCCGCggcgucaucggcgaGUACUGCAUucaGGAcu-CGGCg -3' miRNA: 3'- -CCGGCGa-------------CAUGAUGUA---CCUcauGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 27377 | 0.67 | 0.978957 |
Target: 5'- aGGCCGgUGg---GCAgGGGGUacGCGGCc -3' miRNA: 3'- -CCGGCgACaugaUGUaCCUCA--UGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 23905 | 0.67 | 0.981211 |
Target: 5'- gGGCuCGCUGgGCUGgGccagcUGGGGUgggcucaccucGCGGCg -3' miRNA: 3'- -CCG-GCGACaUGAUgU-----ACCUCA-----------UGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 84821 | 0.67 | 0.978957 |
Target: 5'- uGCCGUUGUAUUGCugAUGcuGAGgccCAGCa -3' miRNA: 3'- cCGGCGACAUGAUG--UAC--CUCau-GUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 52967 | 0.67 | 0.976508 |
Target: 5'- cGCCGCgccgGUGCggcgccgGCAggcGGGG-GCGGCg -3' miRNA: 3'- cCGGCGa---CAUGa------UGUa--CCUCaUGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 35976 | 0.67 | 0.981211 |
Target: 5'- cGGCCGCUGUAgcgGCGgcGGcuccugGCGGCg -3' miRNA: 3'- -CCGGCGACAUga-UGUa-CCuca---UGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 62223 | 0.67 | 0.970396 |
Target: 5'- cGGCCGCgucugcgcccucgcgGUGCUGCAcguccggcgucaccUGGua-GCGGCg -3' miRNA: 3'- -CCGGCGa--------------CAUGAUGU--------------ACCucaUGUCG- -5' |
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23845 | 3' | -51.2 | NC_005261.1 | + | 75935 | 0.67 | 0.973857 |
Target: 5'- uGGcCCGCgUGUACgagGCcugccccgagGUGGAGgucacGCAGCu -3' miRNA: 3'- -CC-GGCG-ACAUGa--UG----------UACCUCa----UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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