miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23845 3' -51.2 NC_005261.1 + 16869 0.78 0.53434
Target:  5'- -cUCGCUGUACUcCAUGuAGUACAGCg -3'
miRNA:   3'- ccGGCGACAUGAuGUACcUCAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 74827 0.76 0.639643
Target:  5'- uGGCCGCcGUGCUcGCGgaccUGGGGagGCGGCg -3'
miRNA:   3'- -CCGGCGaCAUGA-UGU----ACCUCa-UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 60076 0.76 0.650276
Target:  5'- cGGuCCGCgg-GCUGCGUGGGcaGCAGCa -3'
miRNA:   3'- -CC-GGCGacaUGAUGUACCUcaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 123902 0.75 0.692561
Target:  5'- aGGCCGCc--GCU--GUGGGGUGCGGCc -3'
miRNA:   3'- -CCGGCGacaUGAugUACCUCAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 13208 0.74 0.713415
Target:  5'- uGGCCGUUGUACUGCAgcacgaaGAcGUAgAGCc -3'
miRNA:   3'- -CCGGCGACAUGAUGUac-----CU-CAUgUCG- -5'
23845 3' -51.2 NC_005261.1 + 2620 0.74 0.723735
Target:  5'- gGGCCGCcGgGCgGCAUGGGGccCAGCa -3'
miRNA:   3'- -CCGGCGaCaUGaUGUACCUCauGUCG- -5'
23845 3' -51.2 NC_005261.1 + 87207 0.74 0.754144
Target:  5'- uGGCa--UGUacaGCUGCAcGGGGUACAGCg -3'
miRNA:   3'- -CCGgcgACA---UGAUGUaCCUCAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 103605 0.73 0.811546
Target:  5'- uGGCCGCg--GCgGCAgcgcgGGAGgcgGCGGCg -3'
miRNA:   3'- -CCGGCGacaUGaUGUa----CCUCa--UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 132078 0.72 0.820553
Target:  5'- cGGCCGCcGUcgccGCUGCcgcGGAGgGCGGCc -3'
miRNA:   3'- -CCGGCGaCA----UGAUGua-CCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 114281 0.72 0.838004
Target:  5'- uGGCgCGCgcggGCUACGUGGAGgacgccUugAGCg -3'
miRNA:   3'- -CCG-GCGaca-UGAUGUACCUC------AugUCG- -5'
23845 3' -51.2 NC_005261.1 + 118839 0.71 0.870418
Target:  5'- uGCCGCUcUGCgGCGcGGAGgGCGGCg -3'
miRNA:   3'- cCGGCGAcAUGaUGUaCCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 89234 0.71 0.870418
Target:  5'- aGCUGCUGUGCUucgACAUcGAGUGCcugucgugugcgGGCg -3'
miRNA:   3'- cCGGCGACAUGA---UGUAcCUCAUG------------UCG- -5'
23845 3' -51.2 NC_005261.1 + 71386 0.7 0.899146
Target:  5'- cGCCGCgacccgGUAC-GCGUGGuagGCGGCg -3'
miRNA:   3'- cCGGCGa-----CAUGaUGUACCucaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 36588 0.7 0.905713
Target:  5'- cGCCGCg--GCcACcgGGGGgggGCAGCg -3'
miRNA:   3'- cCGGCGacaUGaUGuaCCUCa--UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 136888 0.7 0.917488
Target:  5'- cGGCCGaugaagUGUACUgGCGUGGuGUgggccgcgcggccGCGGCg -3'
miRNA:   3'- -CCGGCg-----ACAUGA-UGUACCuCA-------------UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 107147 0.7 0.918082
Target:  5'- cGGCCGCg--GC--CAUGGAG-GCGGCc -3'
miRNA:   3'- -CCGGCGacaUGauGUACCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 38167 0.7 0.921593
Target:  5'- cGGCCGCaGcacgGCUGCcUGGAGgccugggcgcgccGCGGCg -3'
miRNA:   3'- -CCGGCGaCa---UGAUGuACCUCa------------UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 126340 0.7 0.923882
Target:  5'- cGCCGCUGcgGCcaaGCAU--AGUACAGCg -3'
miRNA:   3'- cCGGCGACa-UGa--UGUAccUCAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 27429 0.7 0.923882
Target:  5'- cGGCCGCgcaUAUUACAauGAGUuugGCGGCg -3'
miRNA:   3'- -CCGGCGac-AUGAUGUacCUCA---UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 111099 0.69 0.929423
Target:  5'- gGGCCGggG-ACUGgGUGGAGUGCu-- -3'
miRNA:   3'- -CCGGCgaCaUGAUgUACCUCAUGucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.