miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23845 3' -51.2 NC_005261.1 + 1407 0.66 0.989877
Target:  5'- cGGCCGCg--GCgGCGgcGGGG-GCGGCg -3'
miRNA:   3'- -CCGGCGacaUGaUGUa-CCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 2620 0.74 0.723735
Target:  5'- gGGCCGCcGgGCgGCAUGGGGccCAGCa -3'
miRNA:   3'- -CCGGCGaCaUGaUGUACCUCauGUCG- -5'
23845 3' -51.2 NC_005261.1 + 3963 0.68 0.953279
Target:  5'- cGCCGCaGgcuCUGCA-GGAGgaACAGCu -3'
miRNA:   3'- cCGGCGaCau-GAUGUaCCUCa-UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 13208 0.74 0.713415
Target:  5'- uGGCCGUUGUACUGCAgcacgaaGAcGUAgAGCc -3'
miRNA:   3'- -CCGGCGACAUGAUGUac-----CU-CAUgUCG- -5'
23845 3' -51.2 NC_005261.1 + 13605 0.68 0.957296
Target:  5'- aGUCGCccggggUGUAC-ACGUGGgagcGGUACGGCu -3'
miRNA:   3'- cCGGCG------ACAUGaUGUACC----UCAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 16869 0.78 0.53434
Target:  5'- -cUCGCUGUACUcCAUGuAGUACAGCg -3'
miRNA:   3'- ccGGCGACAUGAuGUACcUCAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 18323 0.68 0.961071
Target:  5'- aGGucCCGCUGUcgUACAggccGGGGcGCAGCa -3'
miRNA:   3'- -CC--GGCGACAugAUGUa---CCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 23617 0.69 0.949015
Target:  5'- cGCCGCUGccgggGCgcgGCG-GGGGUcggGCGGCu -3'
miRNA:   3'- cCGGCGACa----UGa--UGUaCCUCA---UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 23905 0.67 0.981211
Target:  5'- gGGCuCGCUGgGCUGgGccagcUGGGGUgggcucaccucGCGGCg -3'
miRNA:   3'- -CCG-GCGACaUGAUgU-----ACCUCA-----------UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 27377 0.67 0.978957
Target:  5'- aGGCCGgUGg---GCAgGGGGUacGCGGCc -3'
miRNA:   3'- -CCGGCgACaugaUGUaCCUCA--UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 27429 0.7 0.923882
Target:  5'- cGGCCGCgcaUAUUACAauGAGUuugGCGGCg -3'
miRNA:   3'- -CCGGCGac-AUGAUGUacCUCA---UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 31780 0.67 0.970994
Target:  5'- cGCCGCgGUGCUGCccGcGGcGCAGUg -3'
miRNA:   3'- cCGGCGaCAUGAUGuaCcUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 32249 0.66 0.991153
Target:  5'- cGGCCGC---GCUGC-UGGAGccGCAcGCc -3'
miRNA:   3'- -CCGGCGacaUGAUGuACCUCa-UGU-CG- -5'
23845 3' -51.2 NC_005261.1 + 35221 0.66 0.985171
Target:  5'- uGGCgGCUGgaggggACccgGCA-GGAGgagagGCGGCg -3'
miRNA:   3'- -CCGgCGACa-----UGa--UGUaCCUCa----UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 35976 0.67 0.981211
Target:  5'- cGGCCGCUGUAgcgGCGgcGGcuccugGCGGCg -3'
miRNA:   3'- -CCGGCGACAUga-UGUa-CCuca---UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 36588 0.7 0.905713
Target:  5'- cGCCGCg--GCcACcgGGGGgggGCAGCg -3'
miRNA:   3'- cCGGCGacaUGaUGuaCCUCa--UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 38167 0.7 0.921593
Target:  5'- cGGCCGCaGcacgGCUGCcUGGAGgccugggcgcgccGCGGCg -3'
miRNA:   3'- -CCGGCGaCa---UGAUGuACCUCa------------UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 39065 0.66 0.986895
Target:  5'- aGCCGCgaaaGUACUACAcccgcuccucGGAcgGCGGCa -3'
miRNA:   3'- cCGGCGa---CAUGAUGUa---------CCUcaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 41631 0.66 0.985171
Target:  5'- cGGCCcucgGCgaccuugagGUGC-GCGUGGAG-GCGGCu -3'
miRNA:   3'- -CCGG----CGa--------CAUGaUGUACCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 41888 0.66 0.988461
Target:  5'- cGCgGC-GUACUcgcgcaGCGUGGGGUugGGa -3'
miRNA:   3'- cCGgCGaCAUGA------UGUACCUCAugUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.