miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23845 3' -51.2 NC_005261.1 + 136888 0.7 0.917488
Target:  5'- cGGCCGaugaagUGUACUgGCGUGGuGUgggccgcgcggccGCGGCg -3'
miRNA:   3'- -CCGGCg-----ACAUGA-UGUACCuCA-------------UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 134167 0.67 0.981211
Target:  5'- gGGCUGCUGcucccGCUGCuugcGGAGggccuggcGCGGCu -3'
miRNA:   3'- -CCGGCGACa----UGAUGua--CCUCa-------UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 132078 0.72 0.820553
Target:  5'- cGGCCGCcGUcgccGCUGCcgcGGAGgGCGGCc -3'
miRNA:   3'- -CCGGCGaCA----UGAUGua-CCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 131260 0.66 0.989877
Target:  5'- aGGuCCGCUGc-CUGCGU-GAGUACAu- -3'
miRNA:   3'- -CC-GGCGACauGAUGUAcCUCAUGUcg -5'
23845 3' -51.2 NC_005261.1 + 127495 0.66 0.98328
Target:  5'- uGGCgGCUGc-CUGCcgGGcGUACucGGCg -3'
miRNA:   3'- -CCGgCGACauGAUGuaCCuCAUG--UCG- -5'
23845 3' -51.2 NC_005261.1 + 126340 0.7 0.923882
Target:  5'- cGCCGCUGcgGCcaaGCAU--AGUACAGCg -3'
miRNA:   3'- cCGGCGACa-UGa--UGUAccUCAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 123902 0.75 0.692561
Target:  5'- aGGCCGCc--GCU--GUGGGGUGCGGCc -3'
miRNA:   3'- -CCGGCGacaUGAugUACCUCAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 119785 0.69 0.9445
Target:  5'- cGGUCGC-GUACcGCAgcgcGGAGcuggGCGGCa -3'
miRNA:   3'- -CCGGCGaCAUGaUGUa---CCUCa---UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 119615 0.69 0.93624
Target:  5'- aGCCGCUGUACgugcacugcgGCGUGGccgacaacgccaccgGCGGCg -3'
miRNA:   3'- cCGGCGACAUGa---------UGUACCuca------------UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 118839 0.71 0.870418
Target:  5'- uGCCGCUcUGCgGCGcGGAGgGCGGCg -3'
miRNA:   3'- cCGGCGAcAUGaUGUaCCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 117446 0.69 0.934706
Target:  5'- cGGCgGCU--GCUGCAgaaGGUGCGGCa -3'
miRNA:   3'- -CCGgCGAcaUGAUGUaccUCAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 114281 0.72 0.838004
Target:  5'- uGGCgCGCgcggGCUACGUGGAGgacgccUugAGCg -3'
miRNA:   3'- -CCG-GCGaca-UGAUGUACCUC------AugUCG- -5'
23845 3' -51.2 NC_005261.1 + 111099 0.69 0.929423
Target:  5'- gGGCCGggG-ACUGgGUGGAGUGCu-- -3'
miRNA:   3'- -CCGGCgaCaUGAUgUACCUCAUGucg -5'
23845 3' -51.2 NC_005261.1 + 109849 0.67 0.981211
Target:  5'- uGCCGUUGgugGCgGCuccUGGGG-GCAGCg -3'
miRNA:   3'- cCGGCGACa--UGaUGu--ACCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 107147 0.7 0.918082
Target:  5'- cGGCCGCg--GC--CAUGGAG-GCGGCc -3'
miRNA:   3'- -CCGGCGacaUGauGUACCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 104020 0.68 0.953279
Target:  5'- cGCgCGCUGUACUGCGcgccgcgcaGGAaGUACuGCc -3'
miRNA:   3'- cCG-GCGACAUGAUGUa--------CCU-CAUGuCG- -5'
23845 3' -51.2 NC_005261.1 + 103605 0.73 0.811546
Target:  5'- uGGCCGCg--GCgGCAgcgcgGGAGgcgGCGGCg -3'
miRNA:   3'- -CCGGCGacaUGaUGUa----CCUCa--UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 97927 0.69 0.943096
Target:  5'- -cCCGCUGUACUggccgccagcuccgGCGgcaacgagGGAGgugGCGGCg -3'
miRNA:   3'- ccGGCGACAUGA--------------UGUa-------CCUCa--UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 89852 0.67 0.979882
Target:  5'- gGGCCGCggcgucaucggcgaGUACUGCAUucaGGAcu-CGGCg -3'
miRNA:   3'- -CCGGCGa-------------CAUGAUGUA---CCUcauGUCG- -5'
23845 3' -51.2 NC_005261.1 + 89429 0.68 0.958835
Target:  5'- cGGCCGCcGgGCUccccgcgcccgccguGC-UGGAGUuugACAGCg -3'
miRNA:   3'- -CCGGCGaCaUGA---------------UGuACCUCA---UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.