miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 3' -56.4 NC_005261.1 + 98025 0.72 0.571061
Target:  5'- cGAgGCUGGAGaCgccgcgguacuggCGGCCGcGGGCGg -3'
miRNA:   3'- aCUgCGACCUUaGa------------GCCGGCuUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 97355 0.67 0.820527
Target:  5'- aUGACcgUGGggUCUaCGGCCc-GGGCGu -3'
miRNA:   3'- -ACUGcgACCuuAGA-GCCGGcuUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 97228 0.68 0.803015
Target:  5'- aGGCGCUGGcgccggCcCGGCCGGcuGGGUc -3'
miRNA:   3'- aCUGCGACCuua---GaGCCGGCU--UCCGc -5'
23847 3' -56.4 NC_005261.1 + 97150 0.7 0.677274
Target:  5'- aGGCGCUGGcgccggCcCGGCCGGcugggucgcGGGCGc -3'
miRNA:   3'- aCUGCGACCuua---GaGCCGGCU---------UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 97087 0.72 0.544923
Target:  5'- aGGCGCcGG---CUgGGCCGggGGCGc -3'
miRNA:   3'- aCUGCGaCCuuaGAgCCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 96282 0.66 0.86117
Target:  5'- cGACGCUGGcgcggcuucGGcCUCGGCCGc--GCGc -3'
miRNA:   3'- aCUGCGACC---------UUaGAGCCGGCuucCGC- -5'
23847 3' -56.4 NC_005261.1 + 95470 0.7 0.646637
Target:  5'- cGGCGCUGGAgaagAUCaaGGCCcgcGGCGg -3'
miRNA:   3'- aCUGCGACCU----UAGagCCGGcuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 91245 0.69 0.747038
Target:  5'- cGGCGCUGGAca-UCGGCgacuuuguuaUGAcGGCGg -3'
miRNA:   3'- aCUGCGACCUuagAGCCG----------GCUuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 87773 0.66 0.883823
Target:  5'- cUGGCGCgagGGucaccGUCUUGGCCGccgcguccauggccGGCGg -3'
miRNA:   3'- -ACUGCGa--CCu----UAGAGCCGGCuu------------CCGC- -5'
23847 3' -56.4 NC_005261.1 + 83668 0.66 0.883125
Target:  5'- gGACGCgcgccUGGGcgCgcagCGcGCCGccGAGGCGg -3'
miRNA:   3'- aCUGCG-----ACCUuaGa---GC-CGGC--UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 83391 0.68 0.794022
Target:  5'- -aGCGC-GGc--CUCGGCCGA-GGCGa -3'
miRNA:   3'- acUGCGaCCuuaGAGCCGGCUuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 81371 0.66 0.890003
Target:  5'- gGGCGCcGGg--CUC-GCUGggGGCGc -3'
miRNA:   3'- aCUGCGaCCuuaGAGcCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 80897 0.7 0.687424
Target:  5'- cGGCGCcucccaGGggUCcucgucgCGGUCGAAGGCc -3'
miRNA:   3'- aCUGCGa-----CCuuAGa------GCCGGCUUCCGc -5'
23847 3' -56.4 NC_005261.1 + 79860 0.71 0.584246
Target:  5'- -cGCGCUGGggUugagcuuggccgcCUCGGCCcacAGGGCGc -3'
miRNA:   3'- acUGCGACCuuA-------------GAGCCGGc--UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 79662 0.67 0.851068
Target:  5'- cGA-GCUGGcccuccaccggcucGcUCUCGuuGCCGAAGGCGa -3'
miRNA:   3'- aCUgCGACC--------------UuAGAGC--CGGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 79391 0.71 0.626141
Target:  5'- cGGCGCUGG-AUCUCGcuguaGUCGAgcAGGCc -3'
miRNA:   3'- aCUGCGACCuUAGAGC-----CGGCU--UCCGc -5'
23847 3' -56.4 NC_005261.1 + 78216 0.66 0.889325
Target:  5'- cGugGCUGGccugccgCUCGcucagcaGCCGcAGGCGu -3'
miRNA:   3'- aCugCGACCuua----GAGC-------CGGCuUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 74947 0.66 0.890003
Target:  5'- cGGCGCgGGcgcgCUCGGCgCGcucGAGGCc -3'
miRNA:   3'- aCUGCGaCCuua-GAGCCG-GC---UUCCGc -5'
23847 3' -56.4 NC_005261.1 + 74475 0.68 0.762403
Target:  5'- cGGCGCggcgugccugggcGGGAUCUCGGCgCucuucGGGGCGg -3'
miRNA:   3'- aCUGCGa------------CCUUAGAGCCG-Gc----UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 73163 0.72 0.564999
Target:  5'- cGGCGUUGuug-CUCGGCCGggGGg- -3'
miRNA:   3'- aCUGCGACcuuaGAGCCGGCuuCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.