Results 1 - 20 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23847 | 5' | -47.6 | NC_005261.1 | + | 36594 | 0.65 | 0.999772 |
Target: 5'- gGCCACCGggggggggCAGCGcuccu---GCGCCc -3' miRNA: 3'- -CGGUGGUa-------GUCGCuucuuauuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 34236 | 0.79 | 0.729917 |
Target: 5'- cGCgGCCGUCaucuggGGCGAAGAcUAcGACGCCg -3' miRNA: 3'- -CGgUGGUAG------UCGCUUCUuAU-UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 121553 | 0.78 | 0.750622 |
Target: 5'- aGCCGCCGuccUCGGCGAAGGGcggGGACgagGCCu -3' miRNA: 3'- -CGGUGGU---AGUCGCUUCUUa--UUUG---CGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 107688 | 0.77 | 0.790533 |
Target: 5'- uGCCGCCG-CGGCGggG-----GCGCCg -3' miRNA: 3'- -CGGUGGUaGUCGCuuCuuauuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 54764 | 0.77 | 0.800135 |
Target: 5'- cGCCGCCAgugCGGCGGgcgacaGGAcgGcGCGCCc -3' miRNA: 3'- -CGGUGGUa--GUCGCU------UCUuaUuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 70966 | 0.77 | 0.800135 |
Target: 5'- cGCCGCgA-CGGCGAAGAA-GAGCGCg -3' miRNA: 3'- -CGGUGgUaGUCGCUUCUUaUUUGCGg -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 49195 | 0.77 | 0.809565 |
Target: 5'- gGCCcucgGCCGaCAGCGAGGGcgGGAgGCCg -3' miRNA: 3'- -CGG----UGGUaGUCGCUUCUuaUUUgCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 75313 | 0.77 | 0.809565 |
Target: 5'- cGCCACCGUCGGCGgcGcgcgGAGC-CCu -3' miRNA: 3'- -CGGUGGUAGUCGCuuCuua-UUUGcGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 95405 | 0.77 | 0.818812 |
Target: 5'- gGCCAUCA-CGGCGGAGcaGAacAACGCCa -3' miRNA: 3'- -CGGUGGUaGUCGCUUC--UUauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 15200 | 0.79 | 0.729917 |
Target: 5'- cGCCGCCAUCGcGCGGucguAGAGgcu-CGCCg -3' miRNA: 3'- -CGGUGGUAGU-CGCU----UCUUauuuGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 76043 | 0.79 | 0.729917 |
Target: 5'- cGCgCGCCAUCAGCGuGGccggcGGGCGCCa -3' miRNA: 3'- -CG-GUGGUAGUCGCuUCuua--UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 74442 | 0.79 | 0.708828 |
Target: 5'- cGCC-CCccCGGCGggGggUGggGGCGCCg -3' miRNA: 3'- -CGGuGGuaGUCGCuuCuuAU--UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 69690 | 0.85 | 0.426058 |
Target: 5'- cGCCGCCGUCAGaCGAcGAGUAugcgGACGUCg -3' miRNA: 3'- -CGGUGGUAGUC-GCUuCUUAU----UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 59599 | 0.84 | 0.464713 |
Target: 5'- cGCCACCAccuccgCGGCGcggcGGAUGAGCGCCa -3' miRNA: 3'- -CGGUGGUa-----GUCGCuu--CUUAUUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 31446 | 0.82 | 0.546958 |
Target: 5'- cGCCGCC--CGGCGAGGAc-GAGCGCCg -3' miRNA: 3'- -CGGUGGuaGUCGCUUCUuaUUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 100398 | 0.81 | 0.589837 |
Target: 5'- cGCCGCCGUugucCAGCGggGGGcgcaucgAGGCGCCc -3' miRNA: 3'- -CGGUGGUA----GUCGCuuCUUa------UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 32414 | 0.8 | 0.644143 |
Target: 5'- uGCCGCCGcCGGCGAcgGGAGccccgccggccUGGGCGCCg -3' miRNA: 3'- -CGGUGGUaGUCGCU--UCUU-----------AUUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 32501 | 0.8 | 0.65501 |
Target: 5'- cGgCGgCAUCGGCGggGggUccGCGCCg -3' miRNA: 3'- -CgGUgGUAGUCGCuuCuuAuuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 82621 | 0.8 | 0.676672 |
Target: 5'- aGCCGCCGgaUCAGCGAGGccgacauGUGGugGUCg -3' miRNA: 3'- -CGGUGGU--AGUCGCUUCu------UAUUugCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 92504 | 0.79 | 0.698169 |
Target: 5'- gGCCAgcUCGUCAGCGggGGA-GGAgGCCa -3' miRNA: 3'- -CGGU--GGUAGUCGCuuCUUaUUUgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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