Results 1 - 20 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23848 | 5' | -66.3 | NC_005261.1 | + | 29870 | 0.8 | 0.041077 |
Target: 5'- -cGGCGCCGGCgccgCUGCCgccaGCGCCCGGg -3' miRNA: 3'- cuCCGCGGCCG----GACGGa---CGUGGGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 73774 | 0.79 | 0.054582 |
Target: 5'- cGAGGCGCUGGCCUGCgacgUGCGCgCGGc -3' miRNA: 3'- -CUCCGCGGCCGGACGg---ACGUGgGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 97182 | 0.78 | 0.060492 |
Target: 5'- cGGGCGCCGGCCggGCC-GCGgCCGGa -3' miRNA: 3'- cUCCGCGGCCGGa-CGGaCGUgGGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 43303 | 0.77 | 0.070533 |
Target: 5'- gGGGGCGCCGGCagcccgGCCaGCuucGCCCGGUa -3' miRNA: 3'- -CUCCGCGGCCGga----CGGaCG---UGGGCCA- -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 97085 | 0.77 | 0.070533 |
Target: 5'- gGAGGCGCCGGCUggGCCggggGCGCcagCCGGg -3' miRNA: 3'- -CUCCGCGGCCGGa-CGGa---CGUG---GGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 14241 | 0.75 | 0.100548 |
Target: 5'- --cGCGCCGGCCgggGCCuuUGC-CCCGGUg -3' miRNA: 3'- cucCGCGGCCGGa--CGG--ACGuGGGCCA- -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 42383 | 0.75 | 0.100548 |
Target: 5'- -uGGUGCCGGCCcagcugcGCCUGCACgUGGUu -3' miRNA: 3'- cuCCGCGGCCGGa------CGGACGUGgGCCA- -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 60404 | 0.74 | 0.108394 |
Target: 5'- -uGGCGCCgGGCCgGCCcGgGCCCGGg -3' miRNA: 3'- cuCCGCGG-CCGGaCGGaCgUGGGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 32300 | 0.74 | 0.116812 |
Target: 5'- cGGGCGCCGcccccgccgccGCCgcgGCCgcgGCGCCCGGc -3' miRNA: 3'- cUCCGCGGC-----------CGGa--CGGa--CGUGGGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 59415 | 0.74 | 0.122759 |
Target: 5'- -cGGCGCCGGCgCUGUCgcGCGgCCCGGc -3' miRNA: 3'- cuCCGCGGCCG-GACGGa-CGU-GGGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 24561 | 0.73 | 0.142322 |
Target: 5'- -cGGCGCCaGGUCccagcccgauuUGCCUGCACCCGc- -3' miRNA: 3'- cuCCGCGG-CCGG-----------ACGGACGUGGGCca -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 23799 | 0.72 | 0.15314 |
Target: 5'- cGGGGCagGCCGGCUggggcggGCUUGC-CCCGGg -3' miRNA: 3'- -CUCCG--CGGCCGGa------CGGACGuGGGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 23856 | 0.72 | 0.15314 |
Target: 5'- cGGGGCagGCCGGCUggggcggGCUUGC-CCCGGg -3' miRNA: 3'- -CUCCG--CGGCCGGa------CGGACGuGGGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 31020 | 0.72 | 0.15314 |
Target: 5'- -cGGCGCCGGCCaaaaGCCgGCGCgccgCCGGg -3' miRNA: 3'- cuCCGCGGCCGGa---CGGaCGUG----GGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 41050 | 0.72 | 0.15314 |
Target: 5'- -cGGCGCCGGCCUcagaGCCgGCGgCgCGGUc -3' miRNA: 3'- cuCCGCGGCCGGA----CGGaCGUgG-GCCA- -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 12444 | 0.72 | 0.156909 |
Target: 5'- -cGGCGUCGGCCgcGUCgGCGcCCCGGUa -3' miRNA: 3'- cuCCGCGGCCGGa-CGGaCGU-GGGCCA- -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 90386 | 0.72 | 0.164699 |
Target: 5'- cGAGGCcccGCCGGCgggGCUgGCGCCCGGc -3' miRNA: 3'- -CUCCG---CGGCCGga-CGGaCGUGGGCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 81369 | 0.72 | 0.164699 |
Target: 5'- gGGGGCGCCGGgCUcGCUggggGCGCCgGGc -3' miRNA: 3'- -CUCCGCGGCCgGA-CGGa---CGUGGgCCa -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 62213 | 0.71 | 0.185711 |
Target: 5'- aGGGuGCGCgCGGCCgcGUCUGCGCCCucgcGGUg -3' miRNA: 3'- -CUC-CGCG-GCCGGa-CGGACGUGGG----CCA- -5' |
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23848 | 5' | -66.3 | NC_005261.1 | + | 14973 | 0.71 | 0.185711 |
Target: 5'- uGGGGCGacugcgCGGCCgcgccgGCC-GCGCCCGGa -3' miRNA: 3'- -CUCCGCg-----GCCGGa-----CGGaCGUGGGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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