miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23848 5' -66.3 NC_005261.1 + 330 0.67 0.342915
Target:  5'- -cGGCGgCGGCUgcggcgGCCcGCAgCCCGGc -3'
miRNA:   3'- cuCCGCgGCCGGa-----CGGaCGU-GGGCCa -5'
23848 5' -66.3 NC_005261.1 + 1169 0.68 0.288068
Target:  5'- --cGCGCCGGCCcgcGCC-GCGgCCGGg -3'
miRNA:   3'- cucCGCGGCCGGa--CGGaCGUgGGCCa -5'
23848 5' -66.3 NC_005261.1 + 2690 0.7 0.224241
Target:  5'- cGGcGCGCCGGCUuuugGCCgGCGCCgGGc -3'
miRNA:   3'- cUC-CGCGGCCGGa---CGGaCGUGGgCCa -5'
23848 5' -66.3 NC_005261.1 + 2723 0.68 0.321501
Target:  5'- -uGGCcCCGGCCgacuugcGCUUGCGCCgCGGc -3'
miRNA:   3'- cuCCGcGGCCGGa------CGGACGUGG-GCCa -5'
23848 5' -66.3 NC_005261.1 + 2981 0.67 0.335664
Target:  5'- uGAGGCugggGCuCGGCCUggcgGCCcgGCGCCgGGg -3'
miRNA:   3'- -CUCCG----CG-GCCGGA----CGGa-CGUGGgCCa -5'
23848 5' -66.3 NC_005261.1 + 3854 0.66 0.373034
Target:  5'- -cGGCGCCGGC--GCCgcGCGgCCGGc -3'
miRNA:   3'- cuCCGCGGCCGgaCGGa-CGUgGGCCa -5'
23848 5' -66.3 NC_005261.1 + 4465 0.66 0.396774
Target:  5'- -cGGCGgCGGCCcGUCgcgcgGCGCCgCGGc -3'
miRNA:   3'- cuCCGCgGCCGGaCGGa----CGUGG-GCCa -5'
23848 5' -66.3 NC_005261.1 + 5335 0.66 0.413132
Target:  5'- aGAGGCGCggguCGGCCaGCCgGCuGgUCGGUg -3'
miRNA:   3'- -CUCCGCG----GCCGGaCGGaCG-UgGGCCA- -5'
23848 5' -66.3 NC_005261.1 + 6235 0.66 0.420627
Target:  5'- aGGuGCGCCcggggagGGCCUGCCcGCcCCgCGGg -3'
miRNA:   3'- cUC-CGCGG-------CCGGACGGaCGuGG-GCCa -5'
23848 5' -66.3 NC_005261.1 + 6419 0.66 0.387957
Target:  5'- -uGGC-CCGGCCUGCUcGCGagggcggUCCGGg -3'
miRNA:   3'- cuCCGcGGCCGGACGGaCGU-------GGGCCa -5'
23848 5' -66.3 NC_005261.1 + 6447 0.66 0.388754
Target:  5'- nGGGGCcgGCCGGgCUGCCcGCAcacCCCGc- -3'
miRNA:   3'- -CUCCG--CGGCCgGACGGaCGU---GGGCca -5'
23848 5' -66.3 NC_005261.1 + 9850 0.69 0.263336
Target:  5'- cGGGGCaagcccgccccaGCCGGCCUGCCccgGCgaGCCCa-- -3'
miRNA:   3'- -CUCCG------------CGGCCGGACGGa--CG--UGGGcca -5'
23848 5' -66.3 NC_005261.1 + 9907 0.69 0.263336
Target:  5'- cGGGGCaagcccgccccaGCCGGCCUGCCccgGCgaGCCCa-- -3'
miRNA:   3'- -CUCCG------------CGGCCGGACGGa--CG--UGGGcca -5'
23848 5' -66.3 NC_005261.1 + 12444 0.72 0.156909
Target:  5'- -cGGCGUCGGCCgcGUCgGCGcCCCGGUa -3'
miRNA:   3'- cuCCGCGGCCGGa-CGGaCGU-GGGCCA- -5'
23848 5' -66.3 NC_005261.1 + 12722 0.67 0.335664
Target:  5'- cGGGcGCGCgGGCCcGCCgGCccccugggcggGCCCGGc -3'
miRNA:   3'- -CUC-CGCGgCCGGaCGGaCG-----------UGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 14241 0.75 0.100548
Target:  5'- --cGCGCCGGCCgggGCCuuUGC-CCCGGUg -3'
miRNA:   3'- cucCGCGGCCGGa--CGG--ACGuGGGCCA- -5'
23848 5' -66.3 NC_005261.1 + 14973 0.71 0.185711
Target:  5'- uGGGGCGacugcgCGGCCgcgccgGCC-GCGCCCGGa -3'
miRNA:   3'- -CUCCGCg-----GCCGGa-----CGGaCGUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 21067 0.67 0.357753
Target:  5'- -cGGCGCaCGGUC--CCUGuCGCCCGGc -3'
miRNA:   3'- cuCCGCG-GCCGGacGGAC-GUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 22810 0.67 0.354749
Target:  5'- -cGGCGgCGGCgCUGCCgccgccgccguugGCGCCgGGc -3'
miRNA:   3'- cuCCGCgGCCG-GACGGa------------CGUGGgCCa -5'
23848 5' -66.3 NC_005261.1 + 23483 0.67 0.350278
Target:  5'- cGAGuGCGCgGGCCcGCCUGgGCaggcgCGGg -3'
miRNA:   3'- -CUC-CGCGgCCGGaCGGACgUGg----GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.