miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23848 5' -66.3 NC_005261.1 + 125300 0.66 0.421465
Target:  5'- cGGGCGCCGGaCCcGCggGCGCuCCGcGg -3'
miRNA:   3'- cUCCGCGGCC-GGaCGgaCGUG-GGC-Ca -5'
23848 5' -66.3 NC_005261.1 + 23856 0.72 0.15314
Target:  5'- cGGGGCagGCCGGCUggggcggGCUUGC-CCCGGg -3'
miRNA:   3'- -CUCCG--CGGCCGGa------CGGACGuGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 31020 0.72 0.15314
Target:  5'- -cGGCGCCGGCCaaaaGCCgGCGCgccgCCGGg -3'
miRNA:   3'- cuCCGCGGCCGGa---CGGaCGUG----GGCCa -5'
23848 5' -66.3 NC_005261.1 + 41050 0.72 0.15314
Target:  5'- -cGGCGCCGGCCUcagaGCCgGCGgCgCGGUc -3'
miRNA:   3'- cuCCGCGGCCGGA----CGGaCGUgG-GCCA- -5'
23848 5' -66.3 NC_005261.1 + 12444 0.72 0.156909
Target:  5'- -cGGCGUCGGCCgcGUCgGCGcCCCGGUa -3'
miRNA:   3'- cuCCGCGGCCGGa-CGGaCGU-GGGCCA- -5'
23848 5' -66.3 NC_005261.1 + 81369 0.72 0.164699
Target:  5'- gGGGGCGCCGGgCUcGCUggggGCGCCgGGc -3'
miRNA:   3'- -CUCCGCGGCCgGA-CGGa---CGUGGgCCa -5'
23848 5' -66.3 NC_005261.1 + 90386 0.72 0.164699
Target:  5'- cGAGGCcccGCCGGCgggGCUgGCGCCCGGc -3'
miRNA:   3'- -CUCCG---CGGCCGga-CGGaCGUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 62213 0.71 0.185711
Target:  5'- aGGGuGCGCgCGGCCgcGUCUGCGCCCucgcGGUg -3'
miRNA:   3'- -CUC-CGCG-GCCGGa-CGGACGUGGG----CCA- -5'
23848 5' -66.3 NC_005261.1 + 14973 0.71 0.185711
Target:  5'- uGGGGCGacugcgCGGCCgcgccgGCC-GCGCCCGGa -3'
miRNA:   3'- -CUCCGCg-----GCCGGa-----CGGaCGUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 23799 0.72 0.15314
Target:  5'- cGGGGCagGCCGGCUggggcggGCUUGC-CCCGGg -3'
miRNA:   3'- -CUCCG--CGGCCGGa------CGGACGuGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 24561 0.73 0.142322
Target:  5'- -cGGCGCCaGGUCccagcccgauuUGCCUGCACCCGc- -3'
miRNA:   3'- cuCCGCGG-CCGG-----------ACGGACGUGGGCca -5'
23848 5' -66.3 NC_005261.1 + 59415 0.74 0.122759
Target:  5'- -cGGCGCCGGCgCUGUCgcGCGgCCCGGc -3'
miRNA:   3'- cuCCGCGGCCG-GACGGa-CGU-GGGCCa -5'
23848 5' -66.3 NC_005261.1 + 73774 0.79 0.054582
Target:  5'- cGAGGCGCUGGCCUGCgacgUGCGCgCGGc -3'
miRNA:   3'- -CUCCGCGGCCGGACGg---ACGUGgGCCa -5'
23848 5' -66.3 NC_005261.1 + 97182 0.78 0.060492
Target:  5'- cGGGCGCCGGCCggGCC-GCGgCCGGa -3'
miRNA:   3'- cUCCGCGGCCGGa-CGGaCGUgGGCCa -5'
23848 5' -66.3 NC_005261.1 + 43303 0.77 0.070533
Target:  5'- gGGGGCGCCGGCagcccgGCCaGCuucGCCCGGUa -3'
miRNA:   3'- -CUCCGCGGCCGga----CGGaCG---UGGGCCA- -5'
23848 5' -66.3 NC_005261.1 + 97085 0.77 0.070533
Target:  5'- gGAGGCGCCGGCUggGCCggggGCGCcagCCGGg -3'
miRNA:   3'- -CUCCGCGGCCGGa-CGGa---CGUG---GGCCa -5'
23848 5' -66.3 NC_005261.1 + 42383 0.75 0.100548
Target:  5'- -uGGUGCCGGCCcagcugcGCCUGCACgUGGUu -3'
miRNA:   3'- cuCCGCGGCCGGa------CGGACGUGgGCCA- -5'
23848 5' -66.3 NC_005261.1 + 14241 0.75 0.100548
Target:  5'- --cGCGCCGGCCgggGCCuuUGC-CCCGGUg -3'
miRNA:   3'- cucCGCGGCCGGa--CGG--ACGuGGGCCA- -5'
23848 5' -66.3 NC_005261.1 + 60404 0.74 0.108394
Target:  5'- -uGGCGCCgGGCCgGCCcGgGCCCGGg -3'
miRNA:   3'- cuCCGCGG-CCGGaCGGaCgUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 32300 0.74 0.116812
Target:  5'- cGGGCGCCGcccccgccgccGCCgcgGCCgcgGCGCCCGGc -3'
miRNA:   3'- cUCCGCGGC-----------CGGa--CGGa--CGUGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.