miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23848 5' -66.3 NC_005261.1 + 138001 0.67 0.342915
Target:  5'- -cGGCGgCGGCUgcggcgGCCcGCAgCCCGGc -3'
miRNA:   3'- cuCCGCgGCCGGa-----CGGaCGU-GGGCCa -5'
23848 5' -66.3 NC_005261.1 + 134998 0.66 0.421465
Target:  5'- cGGGGCGCCccuGGCgCggcggGCCcGCACgCGGc -3'
miRNA:   3'- -CUCCGCGG---CCG-Ga----CGGaCGUGgGCCa -5'
23848 5' -66.3 NC_005261.1 + 133824 0.67 0.328526
Target:  5'- cGAGGCGCugcgCGGCC-GCgUGCGCgCCGuGg -3'
miRNA:   3'- -CUCCGCG----GCCGGaCGgACGUG-GGC-Ca -5'
23848 5' -66.3 NC_005261.1 + 133367 0.68 0.307789
Target:  5'- aGGGCuUCGG-CUGCCUGCGCgCGGc -3'
miRNA:   3'- cUCCGcGGCCgGACGGACGUGgGCCa -5'
23848 5' -66.3 NC_005261.1 + 130600 0.66 0.413132
Target:  5'- --cGCGCCuGGCCcgucuuUGCCUGCGCCUu-- -3'
miRNA:   3'- cucCGCGG-CCGG------ACGGACGUGGGcca -5'
23848 5' -66.3 NC_005261.1 + 130519 0.67 0.335664
Target:  5'- cAGGCGCUGGCCgaaGC--GCGCCCGc- -3'
miRNA:   3'- cUCCGCGGCCGGa--CGgaCGUGGGCca -5'
23848 5' -66.3 NC_005261.1 + 129807 0.66 0.373034
Target:  5'- --cGCGCuCGcGCCcgcGcCCUGCGCCCGGa -3'
miRNA:   3'- cucCGCG-GC-CGGa--C-GGACGUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 129747 0.67 0.345847
Target:  5'- cGGGGC-CCGGCCUucagcaccggcgaccGCCggGCucgGCCCGGc -3'
miRNA:   3'- -CUCCGcGGCCGGA---------------CGGa-CG---UGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 127892 0.68 0.281718
Target:  5'- -cGGCGCCcgucgGGCCcggGCCUGgGCuuGGg -3'
miRNA:   3'- cuCCGCGG-----CCGGa--CGGACgUGggCCa -5'
23848 5' -66.3 NC_005261.1 + 127702 0.66 0.376143
Target:  5'- -cGGCGCCggaggagcugcgcguGGCCUGCCUgGUAgCgGGa -3'
miRNA:   3'- cuCCGCGG---------------CCGGACGGA-CGUgGgCCa -5'
23848 5' -66.3 NC_005261.1 + 127495 0.66 0.413132
Target:  5'- -uGGCGgCuGCCUGCCgggcGUACUCGGc -3'
miRNA:   3'- cuCCGCgGcCGGACGGa---CGUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 126523 0.67 0.350278
Target:  5'- uGGGCGcCCGcGCCcGCC-GCGCCuCGGc -3'
miRNA:   3'- cUCCGC-GGC-CGGaCGGaCGUGG-GCCa -5'
23848 5' -66.3 NC_005261.1 + 125300 0.66 0.421465
Target:  5'- cGGGCGCCGGaCCcGCggGCGCuCCGcGg -3'
miRNA:   3'- cUCCGCGGCC-GGaCGgaCGUG-GGC-Ca -5'
23848 5' -66.3 NC_005261.1 + 124645 0.67 0.342915
Target:  5'- aAGGCGCUGG---GCC-GCACCCGGc -3'
miRNA:   3'- cUCCGCGGCCggaCGGaCGUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 123082 0.66 0.373034
Target:  5'- aGAGGCgGCCGGCCacGCCauuuCGCCgCGGc -3'
miRNA:   3'- -CUCCG-CGGCCGGa-CGGac--GUGG-GCCa -5'
23848 5' -66.3 NC_005261.1 + 121238 0.66 0.373034
Target:  5'- -uGGCGCCGGCCaGCUccgACUCGGg -3'
miRNA:   3'- cuCCGCGGCCGGaCGGacgUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 121173 0.67 0.328526
Target:  5'- cGGGCGCUcggugcacggGGCCgggGCC-GgGCCCGGg -3'
miRNA:   3'- cUCCGCGG----------CCGGa--CGGaCgUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 121079 0.66 0.373034
Target:  5'- -cGGCGCCGGCg-GCCgccaGCGCCUccaGGc -3'
miRNA:   3'- cuCCGCGGCCGgaCGGa---CGUGGG---CCa -5'
23848 5' -66.3 NC_005261.1 + 120001 0.67 0.365338
Target:  5'- aGGGCGCCGGCUacgcggccgugUGCC-GCGCcgCCGaGUa -3'
miRNA:   3'- cUCCGCGGCCGG-----------ACGGaCGUG--GGC-CA- -5'
23848 5' -66.3 NC_005261.1 + 118893 0.67 0.342915
Target:  5'- cGGGcGCGCUGGUg-GCCUGCGUCUGGg -3'
miRNA:   3'- -CUC-CGCGGCCGgaCGGACGUGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.