miRNA display CGI


Results 21 - 40 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 60876 0.66 0.600453
Target:  5'- gCGCCGuguucacccGCGCGGCgGGCGa-GCAguuccugcucuaccGGCCc -3'
miRNA:   3'- -GCGGC---------UGCGCCGgCUGCggCGU--------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 7900 0.66 0.603368
Target:  5'- -uCCGGCGCGGCgccaccagaUGGCGCC-UGAGCUc -3'
miRNA:   3'- gcGGCUGCGCCG---------GCUGCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 67857 0.66 0.603368
Target:  5'- gGCCGAgcugcuCGCGGCaacucccgGGCGgCGCGGGUa -3'
miRNA:   3'- gCGGCU------GCGCCGg-------CUGCgGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 28923 0.66 0.591721
Target:  5'- aCGCCGGgccCGaGGCCGAacugaagcugaaGCCG-AAGCCa -3'
miRNA:   3'- -GCGGCU---GCgCCGGCUg-----------CGGCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 95489 0.66 0.603368
Target:  5'- gGCCcGCgGCGGCauCGAC-CCGC-GGCCa -3'
miRNA:   3'- gCGGcUG-CGCCG--GCUGcGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 61236 0.66 0.59366
Target:  5'- gCGuUCGGCGCGaGCuCGACucgcugGCCGCcuccgGGGCCg -3'
miRNA:   3'- -GC-GGCUGCGC-CG-GCUG------CGGCG-----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 82658 0.66 0.59366
Target:  5'- aGCaCG-CGCGGauGAgCGCCuCGAGCCg -3'
miRNA:   3'- gCG-GCuGCGCCggCU-GCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 90662 0.66 0.603368
Target:  5'- gGCCGuCGCGGCCaccguGACGaCCauCGGGCg -3'
miRNA:   3'- gCGGCuGCGCCGG-----CUGC-GGc-GUUCGg -5'
23850 5' -62.6 NC_005261.1 + 29647 0.66 0.612122
Target:  5'- cCGCCggucgggGACGCcauGGCCGcgcagaacGCGCUGUggGCg -3'
miRNA:   3'- -GCGG-------CUGCG---CCGGC--------UGCGGCGuuCGg -5'
23850 5' -62.6 NC_005261.1 + 47066 0.66 0.603368
Target:  5'- gGCCGagcGCGUGGUaCGcgugcACGCCgaagGCGGGCCa -3'
miRNA:   3'- gCGGC---UGCGCCG-GC-----UGCGG----CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 93373 0.66 0.603368
Target:  5'- gCGCCGGCGUGaGCagGAgGuuGCAgAGCa -3'
miRNA:   3'- -GCGGCUGCGC-CGg-CUgCggCGU-UCGg -5'
23850 5' -62.6 NC_005261.1 + 127361 0.66 0.59269
Target:  5'- gGCCcGCGUGGCUagGAUGUCGUuggcggcggcgagGAGCCc -3'
miRNA:   3'- gCGGcUGCGCCGG--CUGCGGCG-------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 58130 0.66 0.59366
Target:  5'- uGCCGAgCGUGGCCaccgccACGUagaucuucacgCGCGAGUCg -3'
miRNA:   3'- gCGGCU-GCGCCGGc-----UGCG-----------GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 81753 0.66 0.59366
Target:  5'- aGaCgGACGCGaa-GACGgCGCGGGCCa -3'
miRNA:   3'- gC-GgCUGCGCcggCUGCgGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 121383 0.66 0.603368
Target:  5'- gCGCCc-CGCGG-CGGCGgCGCcuGCCc -3'
miRNA:   3'- -GCGGcuGCGCCgGCUGCgGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 71018 0.66 0.603368
Target:  5'- uCGCCGcgcaggaagGCGUcguagaGGuCCGAcaccaCGCCGUggGCCa -3'
miRNA:   3'- -GCGGC---------UGCG------CC-GGCU-----GCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 22535 0.66 0.603368
Target:  5'- aCG-CGACGgagGGCCGGgGCCGC-GGCg -3'
miRNA:   3'- -GCgGCUGCg--CCGGCUgCGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 107231 0.66 0.603368
Target:  5'- uCGCCaggaaGACGCaGCCGcccAC-CCGCGGGCg -3'
miRNA:   3'- -GCGG-----CUGCGcCGGC---UGcGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 131612 0.66 0.612122
Target:  5'- gCGCaCGuACGCGcGCCuGGCGCCcGCcgcgaggaccgacGGGCCc -3'
miRNA:   3'- -GCG-GC-UGCGC-CGG-CUGCGG-CG-------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 14732 0.66 0.603368
Target:  5'- gCGUcaCGACgGUGGCaggggcgauCGGCGCCGCGccgcgacaggggGGCCg -3'
miRNA:   3'- -GCG--GCUG-CGCCG---------GCUGCGGCGU------------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.