Results 21 - 40 of 1000 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 60876 | 0.66 | 0.600453 |
Target: 5'- gCGCCGuguucacccGCGCGGCgGGCGa-GCAguuccugcucuaccGGCCc -3' miRNA: 3'- -GCGGC---------UGCGCCGgCUGCggCGU--------------UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 7900 | 0.66 | 0.603368 |
Target: 5'- -uCCGGCGCGGCgccaccagaUGGCGCC-UGAGCUc -3' miRNA: 3'- gcGGCUGCGCCG---------GCUGCGGcGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 67857 | 0.66 | 0.603368 |
Target: 5'- gGCCGAgcugcuCGCGGCaacucccgGGCGgCGCGGGUa -3' miRNA: 3'- gCGGCU------GCGCCGg-------CUGCgGCGUUCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 28923 | 0.66 | 0.591721 |
Target: 5'- aCGCCGGgccCGaGGCCGAacugaagcugaaGCCG-AAGCCa -3' miRNA: 3'- -GCGGCU---GCgCCGGCUg-----------CGGCgUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 95489 | 0.66 | 0.603368 |
Target: 5'- gGCCcGCgGCGGCauCGAC-CCGC-GGCCa -3' miRNA: 3'- gCGGcUG-CGCCG--GCUGcGGCGuUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 61236 | 0.66 | 0.59366 |
Target: 5'- gCGuUCGGCGCGaGCuCGACucgcugGCCGCcuccgGGGCCg -3' miRNA: 3'- -GC-GGCUGCGC-CG-GCUG------CGGCG-----UUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 82658 | 0.66 | 0.59366 |
Target: 5'- aGCaCG-CGCGGauGAgCGCCuCGAGCCg -3' miRNA: 3'- gCG-GCuGCGCCggCU-GCGGcGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 90662 | 0.66 | 0.603368 |
Target: 5'- gGCCGuCGCGGCCaccguGACGaCCauCGGGCg -3' miRNA: 3'- gCGGCuGCGCCGG-----CUGC-GGc-GUUCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 29647 | 0.66 | 0.612122 |
Target: 5'- cCGCCggucgggGACGCcauGGCCGcgcagaacGCGCUGUggGCg -3' miRNA: 3'- -GCGG-------CUGCG---CCGGC--------UGCGGCGuuCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 47066 | 0.66 | 0.603368 |
Target: 5'- gGCCGagcGCGUGGUaCGcgugcACGCCgaagGCGGGCCa -3' miRNA: 3'- gCGGC---UGCGCCG-GC-----UGCGG----CGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 93373 | 0.66 | 0.603368 |
Target: 5'- gCGCCGGCGUGaGCagGAgGuuGCAgAGCa -3' miRNA: 3'- -GCGGCUGCGC-CGg-CUgCggCGU-UCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 127361 | 0.66 | 0.59269 |
Target: 5'- gGCCcGCGUGGCUagGAUGUCGUuggcggcggcgagGAGCCc -3' miRNA: 3'- gCGGcUGCGCCGG--CUGCGGCG-------------UUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 58130 | 0.66 | 0.59366 |
Target: 5'- uGCCGAgCGUGGCCaccgccACGUagaucuucacgCGCGAGUCg -3' miRNA: 3'- gCGGCU-GCGCCGGc-----UGCG-----------GCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 81753 | 0.66 | 0.59366 |
Target: 5'- aGaCgGACGCGaa-GACGgCGCGGGCCa -3' miRNA: 3'- gC-GgCUGCGCcggCUGCgGCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 121383 | 0.66 | 0.603368 |
Target: 5'- gCGCCc-CGCGG-CGGCGgCGCcuGCCc -3' miRNA: 3'- -GCGGcuGCGCCgGCUGCgGCGuuCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 71018 | 0.66 | 0.603368 |
Target: 5'- uCGCCGcgcaggaagGCGUcguagaGGuCCGAcaccaCGCCGUggGCCa -3' miRNA: 3'- -GCGGC---------UGCG------CC-GGCU-----GCGGCGuuCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 22535 | 0.66 | 0.603368 |
Target: 5'- aCG-CGACGgagGGCCGGgGCCGC-GGCg -3' miRNA: 3'- -GCgGCUGCg--CCGGCUgCGGCGuUCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 107231 | 0.66 | 0.603368 |
Target: 5'- uCGCCaggaaGACGCaGCCGcccAC-CCGCGGGCg -3' miRNA: 3'- -GCGG-----CUGCGcCGGC---UGcGGCGUUCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 131612 | 0.66 | 0.612122 |
Target: 5'- gCGCaCGuACGCGcGCCuGGCGCCcGCcgcgaggaccgacGGGCCc -3' miRNA: 3'- -GCG-GC-UGCGC-CGG-CUGCGG-CG-------------UUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 14732 | 0.66 | 0.603368 |
Target: 5'- gCGUcaCGACgGUGGCaggggcgauCGGCGCCGCGccgcgacaggggGGCCg -3' miRNA: 3'- -GCG--GCUG-CGCCG---------GCUGCGGCGU------------UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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