miRNA display CGI


Results 21 - 40 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 2183 0.71 0.334159
Target:  5'- aGUCGGCGCucagcagcaGCCGguugcccaGCGCCGCGAGCa -3'
miRNA:   3'- gCGGCUGCGc--------CGGC--------UGCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 2262 0.78 0.128233
Target:  5'- cCGCCGGCGCucguccucgccGGgCGGCGCCGCcAGCg -3'
miRNA:   3'- -GCGGCUGCG-----------CCgGCUGCGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 2376 0.7 0.371438
Target:  5'- gCGCCGccGCaGCGGCgCGcuggcggcgagcGCGcCCGCGGGCCc -3'
miRNA:   3'- -GCGGC--UG-CGCCG-GC------------UGC-GGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 2419 0.66 0.613096
Target:  5'- -cCCG-CGCGGCgGcGgGCCGCGaucucGGCCa -3'
miRNA:   3'- gcGGCuGCGCCGgC-UgCGGCGU-----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 2471 0.71 0.333442
Target:  5'- gCGCCgGGCGCcagGGCUcggggaagagcggGugGuCCGCGAGCCg -3'
miRNA:   3'- -GCGG-CUGCG---CCGG-------------CugC-GGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 2516 0.67 0.574326
Target:  5'- gCGCCGcgaccucgggGCGgcaguaGGCCGccaGCGCCGCGGcGCUg -3'
miRNA:   3'- -GCGGC----------UGCg-----CCGGC---UGCGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 2587 0.7 0.403239
Target:  5'- gGCgGcACGCGGCgGAaGCCGCcgucggcggcgGGGCCg -3'
miRNA:   3'- gCGgC-UGCGCCGgCUgCGGCG-----------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 2706 0.78 0.132742
Target:  5'- gGCCGGCGCcgggccccuggccccGGCCGacuugcgcuuGCGCCGCGgcgGGCCg -3'
miRNA:   3'- gCGGCUGCG---------------CCGGC----------UGCGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 2815 0.67 0.574326
Target:  5'- gGCCGG-GCGGCCccaGCC-CGAGCUc -3'
miRNA:   3'- gCGGCUgCGCCGGcugCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 2990 0.73 0.27415
Target:  5'- gGCuCGGCcugGCGGcCCGGCGCCggggcucccGCGGGCCu -3'
miRNA:   3'- gCG-GCUG---CGCC-GGCUGCGG---------CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3343 0.66 0.622836
Target:  5'- gCGCCG-CgGCGcCCGGCGC-GCcGGCCu -3'
miRNA:   3'- -GCGGCuG-CGCcGGCUGCGgCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3374 0.76 0.163785
Target:  5'- gGCCGcgaGCGCGGCCGccaGCCGCGccGGCa -3'
miRNA:   3'- gCGGC---UGCGCCGGCug-CGGCGU--UCGg -5'
23850 5' -62.6 NC_005261.1 + 3409 0.8 0.085896
Target:  5'- cCGCCGGCG-GGCUGAagaGCgCGCGGGCCa -3'
miRNA:   3'- -GCGGCUGCgCCGGCUg--CG-GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3446 0.74 0.239146
Target:  5'- gGCgGGCGCgcgGGCCGccGCGCCGCGcGUCg -3'
miRNA:   3'- gCGgCUGCG---CCGGC--UGCGGCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 3505 0.77 0.138075
Target:  5'- gCGCCGccaGCGCGGCCGccuccaGCGCgGC-GGCCg -3'
miRNA:   3'- -GCGGC---UGCGCCGGC------UGCGgCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3552 0.72 0.286698
Target:  5'- aGCgCGGCG-GGCgCGGCGCCGCuaAGGCg -3'
miRNA:   3'- gCG-GCUGCgCCG-GCUGCGGCG--UUCGg -5'
23850 5' -62.6 NC_005261.1 + 3666 0.75 0.193719
Target:  5'- gCGCaGGcCGCGGCCGGCagGCCGC-GGCCc -3'
miRNA:   3'- -GCGgCU-GCGCCGGCUG--CGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3733 0.73 0.256158
Target:  5'- uGCCgGACGC-GCCGGCGgCGCAccgcGCCg -3'
miRNA:   3'- gCGG-CUGCGcCGGCUGCgGCGUu---CGG- -5'
23850 5' -62.6 NC_005261.1 + 3804 0.7 0.402423
Target:  5'- aGCUcGCGCaGCCGcucgcgcGCuGCCGCGGGCCc -3'
miRNA:   3'- gCGGcUGCGcCGGC-------UG-CGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 3841 0.79 0.11326
Target:  5'- gCGCUGGCggcaGCGgcGCCGGCGCCGCGcGGCCg -3'
miRNA:   3'- -GCGGCUG----CGC--CGGCUGCGGCGU-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.