miRNA display CGI


Results 21 - 40 of 1000 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 134358 0.76 0.180343
Target:  5'- gCGCCGccGCGCGGggggCGGCGCCGCuGGCg -3'
miRNA:   3'- -GCGGC--UGCGCCg---GCUGCGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 134234 0.69 0.445324
Target:  5'- gCGUCGGCGUGGCgcacGCGCCcuGCGcGGCCg -3'
miRNA:   3'- -GCGGCUGCGCCGgc--UGCGG--CGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 134194 0.78 0.119042
Target:  5'- gGCCuGGCGCGGCuCGGCGC-GCGGGUCg -3'
miRNA:   3'- gCGG-CUGCGCCG-GCUGCGgCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 134103 0.73 0.268043
Target:  5'- gCGCCGGCGCGcGCuCGcCGCCGacuuccGCCu -3'
miRNA:   3'- -GCGGCUGCGC-CG-GCuGCGGCguu---CGG- -5'
23850 5' -62.6 NC_005261.1 + 133947 0.72 0.305689
Target:  5'- gCGCCaGGCGCGGCgcauguuCGGCcuuuGCCGCAAcgacGCCg -3'
miRNA:   3'- -GCGG-CUGCGCCG-------GCUG----CGGCGUU----CGG- -5'
23850 5' -62.6 NC_005261.1 + 133896 0.67 0.583977
Target:  5'- aGCC--CGCGGC--GCGCUGCuGGCCu -3'
miRNA:   3'- gCGGcuGCGCCGgcUGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 133844 0.78 0.125098
Target:  5'- uGCgCGcCGUGGCCGGCGCgCGCGAcuGCCg -3'
miRNA:   3'- gCG-GCuGCGCCGGCUGCG-GCGUU--CGG- -5'
23850 5' -62.6 NC_005261.1 + 133748 0.66 0.59366
Target:  5'- aCGCC-ACGCGcGCgauCGACGCCcCGuGCCu -3'
miRNA:   3'- -GCGGcUGCGC-CG---GCUGCGGcGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 133619 0.74 0.228336
Target:  5'- gCGCUGGCGCugugGGCCGcgcuCGCCGC--GCCg -3'
miRNA:   3'- -GCGGCUGCG----CCGGCu---GCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 133337 0.69 0.428191
Target:  5'- uGCCGgcACGCGcGCgCGGCGCUGCcgcgcaGGGCUu -3'
miRNA:   3'- gCGGC--UGCGC-CG-GCUGCGGCG------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 133262 0.71 0.362998
Target:  5'- aGgCGGCGCGcgaguaccagggcGCCGGCGCCcGCcucguGGCCg -3'
miRNA:   3'- gCgGCUGCGC-------------CGGCUGCGG-CGu----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 133208 0.76 0.176069
Target:  5'- uCGCCGACGCcGUCGAgGCCGagcugGGGCCc -3'
miRNA:   3'- -GCGGCUGCGcCGGCUgCGGCg----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 133163 0.69 0.419772
Target:  5'- cCGUCGGCGuCGccGCCGACaaCCGCGGcGCCg -3'
miRNA:   3'- -GCGGCUGC-GC--CGGCUGc-GGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 132959 0.81 0.079601
Target:  5'- gCGCCGACGUGGCCGccuucguCGCCGCGcaCCg -3'
miRNA:   3'- -GCGGCUGCGCCGGCu------GCGGCGUucGG- -5'
23850 5' -62.6 NC_005261.1 + 132896 0.72 0.29314
Target:  5'- aGCCGGgcgcCGCGGgCGGCGCCGagcGGCg -3'
miRNA:   3'- gCGGCU----GCGCCgGCUGCGGCgu-UCGg -5'
23850 5' -62.6 NC_005261.1 + 132839 0.78 0.125098
Target:  5'- uCGUCGACGCGGCCGucuacACGCacggGCAcAGCCu -3'
miRNA:   3'- -GCGGCUGCGCCGGC-----UGCGg---CGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 132627 0.67 0.545618
Target:  5'- gCGCUGGCGCcgaggacGCgGGCGCgGC-GGCCc -3'
miRNA:   3'- -GCGGCUGCGc------CGgCUGCGgCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 132582 0.78 0.124789
Target:  5'- aCGUCGGCGCGcccGCgGACGCCcggcccgGCGAGCCg -3'
miRNA:   3'- -GCGGCUGCGC---CGgCUGCGG-------CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 132488 0.67 0.544668
Target:  5'- uCGCCguccuggGACGCGcCCGAcCGCgaCGCGGGCUg -3'
miRNA:   3'- -GCGG-------CUGCGCcGGCU-GCG--GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 132375 0.7 0.387124
Target:  5'- uCGCCGcgcuCGCGGCgcuguucccCGAgGCCGCc-GCCg -3'
miRNA:   3'- -GCGGCu---GCGCCG---------GCUgCGGCGuuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.