miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 3' -60.2 NC_005261.1 + 61706 0.66 0.711446
Target:  5'- cAUCcgCCcgCCcgugugccccccccaUCCCCGgCUCCCUUGUg -3'
miRNA:   3'- -UAGa-GGuaGG---------------AGGGGUgGAGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 83973 0.66 0.707504
Target:  5'- uUCUCCcccUCUCCCCcCCUuucCCCCUcccGCg -3'
miRNA:   3'- uAGAGGua-GGAGGGGuGGA---GGGGA---CG- -5'
23851 3' -60.2 NC_005261.1 + 39572 0.66 0.697609
Target:  5'- --gUCUGUCCcCCUCucCCUCCCCaGCg -3'
miRNA:   3'- uagAGGUAGGaGGGGu-GGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 25726 0.66 0.697609
Target:  5'- cUCUCCccCCUCuCCCACCgggCCgCgcucgGCg -3'
miRNA:   3'- uAGAGGuaGGAG-GGGUGGa--GGgGa----CG- -5'
23851 3' -60.2 NC_005261.1 + 62027 0.66 0.697609
Target:  5'- cGUCUgCCGUCCUCCCgCGgCUCggCCgGCu -3'
miRNA:   3'- -UAGA-GGUAGGAGGG-GUgGAGg-GGaCG- -5'
23851 3' -60.2 NC_005261.1 + 15101 0.66 0.697609
Target:  5'- gGUCUCCGacgUCUCCCCGgCCUgaUCCgGCg -3'
miRNA:   3'- -UAGAGGUa--GGAGGGGU-GGAg-GGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 114715 0.66 0.687661
Target:  5'- cUCgcugCUAUCCa-CCUGCCUCCUCUGUu -3'
miRNA:   3'- uAGa---GGUAGGagGGGUGGAGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 86719 0.66 0.667639
Target:  5'- --gUCCAgCUUCgCCGCCUCguccgccgcgCCCUGCa -3'
miRNA:   3'- uagAGGUaGGAGgGGUGGAG----------GGGACG- -5'
23851 3' -60.2 NC_005261.1 + 102404 0.66 0.666634
Target:  5'- cUCgcgCCAgcgcUCCUCCugccgcugcgcggCCGCCUCCUCgGCg -3'
miRNA:   3'- uAGa--GGU----AGGAGG-------------GGUGGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 24460 0.66 0.657581
Target:  5'- -gCUCCGcgcUCCUUCCCAgCUCCagUGUg -3'
miRNA:   3'- uaGAGGU---AGGAGGGGUgGAGGggACG- -5'
23851 3' -60.2 NC_005261.1 + 45910 0.66 0.656574
Target:  5'- cUCgCCGUCgUCCUCGCCcucgccgUCCCCgccGCg -3'
miRNA:   3'- uAGaGGUAGgAGGGGUGG-------AGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 578 0.67 0.647504
Target:  5'- -aCUaCGcUCCUCCCC-CCUCCCCcucUGUu -3'
miRNA:   3'- uaGAgGU-AGGAGGGGuGGAGGGG---ACG- -5'
23851 3' -60.2 NC_005261.1 + 11150 0.67 0.637414
Target:  5'- cUCUCCc-CCUCCCCuccccguaucucGCCgcggCCCCgGCc -3'
miRNA:   3'- uAGAGGuaGGAGGGG------------UGGa---GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 118527 0.67 0.637414
Target:  5'- ----gCGcCCUgCCCCGCCgaCCCCUGCg -3'
miRNA:   3'- uagagGUaGGA-GGGGUGGa-GGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 6989 0.67 0.637414
Target:  5'- cUCUCUuUCCacuuUCCCCACCcCCCCc-- -3'
miRNA:   3'- uAGAGGuAGG----AGGGGUGGaGGGGacg -5'
23851 3' -60.2 NC_005261.1 + 25928 0.67 0.627321
Target:  5'- uUCUUUggCCcugCCCCGCCUCCCgUacGCa -3'
miRNA:   3'- uAGAGGuaGGa--GGGGUGGAGGGgA--CG- -5'
23851 3' -60.2 NC_005261.1 + 26382 0.67 0.627321
Target:  5'- cUCUCC-UCCUCCCC-CUUUUCCguucucGCg -3'
miRNA:   3'- uAGAGGuAGGAGGGGuGGAGGGGa-----CG- -5'
23851 3' -60.2 NC_005261.1 + 5992 0.67 0.617232
Target:  5'- cGUCUCCGcUCCUCCCgCGgCgagggCUCCgGCg -3'
miRNA:   3'- -UAGAGGU-AGGAGGG-GUgGa----GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 6497 0.67 0.617232
Target:  5'- -cCUUCAcccuUCCcccuuUCCCCcCCUCCgCCUGCc -3'
miRNA:   3'- uaGAGGU----AGG-----AGGGGuGGAGG-GGACG- -5'
23851 3' -60.2 NC_005261.1 + 28060 0.67 0.617232
Target:  5'- cUCUCCcUCCUCguugCCCGCCcCCCCc-- -3'
miRNA:   3'- uAGAGGuAGGAG----GGGUGGaGGGGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.