Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23851 | 3' | -60.2 | NC_005261.1 | + | 22406 | 1.09 | 0.000903 |
Target: 5'- uAUCUCCAUCCUCCCCACCUCCCCUGCg -3' miRNA: 3'- -UAGAGGUAGGAGGGGUGGAGGGGACG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 81398 | 0.78 | 0.149046 |
Target: 5'- -gCUCCcggCCUCCCCAgCUCCCCcagGCa -3' miRNA: 3'- uaGAGGua-GGAGGGGUgGAGGGGa--CG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 5694 | 0.76 | 0.191319 |
Target: 5'- -cCUCCcucUCCUCCCCGCCggcCCCCUuucGCg -3' miRNA: 3'- uaGAGGu--AGGAGGGGUGGa--GGGGA---CG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 52093 | 0.75 | 0.216179 |
Target: 5'- -cCUCCcccCUUCCCCcCCUCUCCUGCg -3' miRNA: 3'- uaGAGGua-GGAGGGGuGGAGGGGACG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 79011 | 0.74 | 0.25558 |
Target: 5'- -aCUCC-UCCUCCCCcuCCUCgCCCgggGCg -3' miRNA: 3'- uaGAGGuAGGAGGGGu-GGAG-GGGa--CG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 28333 | 0.73 | 0.307602 |
Target: 5'- cUCUCCcucCCUCCCUcCCUCCCCcGUc -3' miRNA: 3'- uAGAGGua-GGAGGGGuGGAGGGGaCG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 3271 | 0.72 | 0.351682 |
Target: 5'- cGUCcUCGUCCUCCCCGuCCUCCUCcagGUc -3' miRNA: 3'- -UAGaGGUAGGAGGGGU-GGAGGGGa--CG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 5023 | 0.72 | 0.351682 |
Target: 5'- uUCUCCggGUCCUCCUCuuccuCCUCCCCc-- -3' miRNA: 3'- uAGAGG--UAGGAGGGGu----GGAGGGGacg -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 105042 | 0.72 | 0.329097 |
Target: 5'- -gCUCCcacccccgccCCUCCCCAgcCCUCCCCgGCa -3' miRNA: 3'- uaGAGGua--------GGAGGGGU--GGAGGGGaCG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 753 | 0.72 | 0.329097 |
Target: 5'- cUCUCCcgCCUCCCguuucCCUCCCCUc- -3' miRNA: 3'- uAGAGGuaGGAGGGgu---GGAGGGGAcg -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 82529 | 0.71 | 0.391706 |
Target: 5'- aGUCggccCCAUCCUCgCCCcCCUCCUCgcccGCg -3' miRNA: 3'- -UAGa---GGUAGGAG-GGGuGGAGGGGa---CG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 114881 | 0.71 | 0.383467 |
Target: 5'- uUUUCCcuuUUCUCCCCcuuCC-CCCCUGCu -3' miRNA: 3'- uAGAGGu--AGGAGGGGu--GGaGGGGACG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 101840 | 0.71 | 0.375344 |
Target: 5'- gAUCUCCG-CCgcgCgCCCGCCggCCgCCUGCa -3' miRNA: 3'- -UAGAGGUaGGa--G-GGGUGGa-GG-GGACG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 16357 | 0.71 | 0.375344 |
Target: 5'- -gCUCCGUCCucuUCCCCGCCgccuUCUCCguggGCc -3' miRNA: 3'- uaGAGGUAGG---AGGGGUGG----AGGGGa---CG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 3136 | 0.7 | 0.434582 |
Target: 5'- cGUCcCCGUCCccgUCCCCGuCCgaggCCCCgGCg -3' miRNA: 3'- -UAGaGGUAGG---AGGGGU-GGa---GGGGaCG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 33221 | 0.7 | 0.443479 |
Target: 5'- cUCUCCcucccCCUCCCUccucuCCUCCCC-GCg -3' miRNA: 3'- uAGAGGua---GGAGGGGu----GGAGGGGaCG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 13769 | 0.7 | 0.443479 |
Target: 5'- -cCUUCccCUUCCCCGcCCUCgCCCUGCc -3' miRNA: 3'- uaGAGGuaGGAGGGGU-GGAG-GGGACG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 24872 | 0.7 | 0.461576 |
Target: 5'- -cCUCCcacggCCugUCCCCGCC-CCCUUGCc -3' miRNA: 3'- uaGAGGua---GG--AGGGGUGGaGGGGACG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 2871 | 0.69 | 0.498887 |
Target: 5'- uUCUUCcUCCUCCuCCuCCUCCUCgGCc -3' miRNA: 3'- uAGAGGuAGGAGG-GGuGGAGGGGaCG- -5' |
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23851 | 3' | -60.2 | NC_005261.1 | + | 22369 | 0.69 | 0.498887 |
Target: 5'- cGUCUUC-UCCUCCCUGCCcucccUCCCCa-- -3' miRNA: 3'- -UAGAGGuAGGAGGGGUGG-----AGGGGacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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