miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 5' -58.2 NC_005261.1 + 32384 0.66 0.86092
Target:  5'- aGGCGcGGCGcGGCGGcguccCGGAGCGcguGCCGc -3'
miRNA:   3'- cCUGC-CUGC-CUGCCu----GUCUCGC---UGGC- -5'
23851 5' -58.2 NC_005261.1 + 18664 0.66 0.86092
Target:  5'- cGGGCGGGCcccaGCGGGCGaAGgGGCCc -3'
miRNA:   3'- -CCUGCCUGcc--UGCCUGUcUCgCUGGc -5'
23851 5' -58.2 NC_005261.1 + 85936 0.66 0.86092
Target:  5'- --cUGGAUGG-CGGcCAGGGCG-CCGc -3'
miRNA:   3'- ccuGCCUGCCuGCCuGUCUCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 72828 0.66 0.86092
Target:  5'- aGGGCcgcaaGGCGGuCGGcCAGGGCG-CCa -3'
miRNA:   3'- -CCUGc----CUGCCuGCCuGUCUCGCuGGc -5'
23851 5' -58.2 NC_005261.1 + 32099 0.66 0.86092
Target:  5'- cGGACuucGCGGA-GGGCGaGGCGGCCa -3'
miRNA:   3'- -CCUGcc-UGCCUgCCUGUcUCGCUGGc -5'
23851 5' -58.2 NC_005261.1 + 68694 0.66 0.853425
Target:  5'- gGGGcCGGcGCGGAC-GACGGcGGCG-CCGg -3'
miRNA:   3'- -CCU-GCC-UGCCUGcCUGUC-UCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 126956 0.66 0.853425
Target:  5'- cGGGCGcGgGGGCGG-CAGcGCGAaCCGn -3'
miRNA:   3'- -CCUGCcUgCCUGCCuGUCuCGCU-GGC- -5'
23851 5' -58.2 NC_005261.1 + 59724 0.66 0.853425
Target:  5'- cGcCGGGCGGcaGCGG-CGGcgcGCGGCCGc -3'
miRNA:   3'- cCuGCCUGCC--UGCCuGUCu--CGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 69934 0.66 0.853425
Target:  5'- gGGugGgGugGGAgcCGGggauaGCGGAGgGGCCu -3'
miRNA:   3'- -CCugC-CugCCU--GCC-----UGUCUCgCUGGc -5'
23851 5' -58.2 NC_005261.1 + 97054 0.66 0.853425
Target:  5'- aGGGCGGGgGGcgGCGGGCAcGAuccGCGucggaggcGCCGg -3'
miRNA:   3'- -CCUGCCUgCC--UGCCUGU-CU---CGC--------UGGC- -5'
23851 5' -58.2 NC_005261.1 + 40170 0.66 0.853425
Target:  5'- aGugGGGCaGGGCccACAGGGgGGCCa -3'
miRNA:   3'- cCugCCUG-CCUGccUGUCUCgCUGGc -5'
23851 5' -58.2 NC_005261.1 + 9644 0.66 0.852665
Target:  5'- uGGGUGGGCGGGgcccacuCGGGCGG-GCGcCCa -3'
miRNA:   3'- -CCUGCCUGCCU-------GCCUGUCuCGCuGGc -5'
23851 5' -58.2 NC_005261.1 + 87823 0.66 0.845741
Target:  5'- gGGACGG--GGACGGggaACgAGAGCGAaaGa -3'
miRNA:   3'- -CCUGCCugCCUGCC---UG-UCUCGCUggC- -5'
23851 5' -58.2 NC_005261.1 + 13396 0.66 0.845741
Target:  5'- -cGCGGucuCGGAgCGG-UAGGGCGACgCGa -3'
miRNA:   3'- ccUGCCu--GCCU-GCCuGUCUCGCUG-GC- -5'
23851 5' -58.2 NC_005261.1 + 121775 0.66 0.844963
Target:  5'- cGGugGGguggccgcggccgGCGGGCuGGGCAGGgggcgcGUGGCUGg -3'
miRNA:   3'- -CCugCC-------------UGCCUG-CCUGUCU------CGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 109884 0.66 0.837875
Target:  5'- -cGCGGGCGGGCGcccCGGGGCuacagccccugGACCGc -3'
miRNA:   3'- ccUGCCUGCCUGCcu-GUCUCG-----------CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 128507 0.66 0.837875
Target:  5'- cGACGcGGCGG-CGGagGCAGccuccuGGCGGCUGg -3'
miRNA:   3'- cCUGC-CUGCCuGCC--UGUC------UCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 23984 0.66 0.837875
Target:  5'- cGGGCGGGCuaguCGcGGCGGAGCGcuGCUGc -3'
miRNA:   3'- -CCUGCCUGccu-GC-CUGUCUCGC--UGGC- -5'
23851 5' -58.2 NC_005261.1 + 78484 0.66 0.837875
Target:  5'- gGGAauCGGGCGaaGCGGACAGAcGCGAg-- -3'
miRNA:   3'- -CCU--GCCUGCc-UGCCUGUCU-CGCUggc -5'
23851 5' -58.2 NC_005261.1 + 7991 0.66 0.837875
Target:  5'- cGGugGGAgaGGGgGGAgAGGGgGGCUu -3'
miRNA:   3'- -CCugCCUg-CCUgCCUgUCUCgCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.