miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23860 5' -51.6 NC_005262.1 + 45760 0.66 0.89032
Target:  5'- -cGCgAACGCGACgccgAUCgGCaucgCGGCGa -3'
miRNA:   3'- caUGgUUGCGUUGa---UAGgCGa---GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 50651 0.66 0.89032
Target:  5'- uGUGCC-GCGCAGCg---CGCgCGGCGg -3'
miRNA:   3'- -CAUGGuUGCGUUGauagGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 62817 0.66 0.89032
Target:  5'- -cGCCcGCGCAGgUcgCCaCUCGGCa -3'
miRNA:   3'- caUGGuUGCGUUgAuaGGcGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 13694 0.67 0.882772
Target:  5'- -gGCCGgcuucuguucGCGCGGCgcggGUUCGgUCGGCGc -3'
miRNA:   3'- caUGGU----------UGCGUUGa---UAGGCgAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 40291 0.67 0.882772
Target:  5'- cUGCUGGCGCAGC--UCCucggGCgUCAGCGg -3'
miRNA:   3'- cAUGGUUGCGUUGauAGG----CG-AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 37885 0.67 0.874955
Target:  5'- cGUGgCGACGUAccauGCgcgCUGCUCGGCa -3'
miRNA:   3'- -CAUgGUUGCGU----UGauaGGCGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 28163 0.67 0.874955
Target:  5'- -cGCgCGGCGCAACUG--CGCgCGGCGg -3'
miRNA:   3'- caUG-GUUGCGUUGAUagGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 53841 0.67 0.867696
Target:  5'- -cACCGGCGCGGCgcggacggcaagcagAUCgCGCUCAaGCc -3'
miRNA:   3'- caUGGUUGCGUUGa--------------UAG-GCGAGU-CGc -5'
23860 5' -51.6 NC_005262.1 + 36147 0.67 0.866877
Target:  5'- -cGCCAGCGCGAUcgaCCaGCUCgAGCa -3'
miRNA:   3'- caUGGUUGCGUUGauaGG-CGAG-UCGc -5'
23860 5' -51.6 NC_005262.1 + 46243 0.67 0.866877
Target:  5'- -cGCCGcCGCGGCUG-CCGcCUCGcGCGc -3'
miRNA:   3'- caUGGUuGCGUUGAUaGGC-GAGU-CGC- -5'
23860 5' -51.6 NC_005262.1 + 6351 0.67 0.866877
Target:  5'- -cGCCGcCGCGGC-AUCCGCggaCGGUGc -3'
miRNA:   3'- caUGGUuGCGUUGaUAGGCGa--GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 11523 0.67 0.858543
Target:  5'- uGUGCCugaacAUGCGACUcggCCGCUCGcCGg -3'
miRNA:   3'- -CAUGGu----UGCGUUGAua-GGCGAGUcGC- -5'
23860 5' -51.6 NC_005262.1 + 61700 0.67 0.858543
Target:  5'- -gAUCAggGCGCGcCggGUUCGCUCGGCGc -3'
miRNA:   3'- caUGGU--UGCGUuGa-UAGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 42050 0.67 0.858543
Target:  5'- cGUGCCGcuGCGCGAUcuUCCGUg-AGCGc -3'
miRNA:   3'- -CAUGGU--UGCGUUGauAGGCGagUCGC- -5'
23860 5' -51.6 NC_005262.1 + 51781 0.67 0.858543
Target:  5'- -gACCGAUGCGcagguccagGCUGUcacguaCCGCcUCGGCGa -3'
miRNA:   3'- caUGGUUGCGU---------UGAUA------GGCG-AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 58771 0.67 0.849962
Target:  5'- -gGCCGGCgaGCAACUG-CCGCUggaGGCa -3'
miRNA:   3'- caUGGUUG--CGUUGAUaGGCGAg--UCGc -5'
23860 5' -51.6 NC_005262.1 + 24630 0.67 0.849962
Target:  5'- uUGCCAGCGCGcuucaGCgaaCCGCUgaCAGCu -3'
miRNA:   3'- cAUGGUUGCGU-----UGauaGGCGA--GUCGc -5'
23860 5' -51.6 NC_005262.1 + 50873 0.67 0.849962
Target:  5'- gGUGCCGACGCAA----UCGCaCGGCGc -3'
miRNA:   3'- -CAUGGUUGCGUUgauaGGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 2165 0.67 0.849962
Target:  5'- -cAUCAGCGCGGCUAUugUCGgaCGGCu -3'
miRNA:   3'- caUGGUUGCGUUGAUA--GGCgaGUCGc -5'
23860 5' -51.6 NC_005262.1 + 57269 0.67 0.849962
Target:  5'- -aACCAgcucGCGCAGCUcacggcCCGCgugCAGCa -3'
miRNA:   3'- caUGGU----UGCGUUGAua----GGCGa--GUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.