miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23860 5' -51.6 NC_005262.1 + 13562 0.68 0.841142
Target:  5'- -gACCGuUGCuugGC-AUCCGCUCGGCu -3'
miRNA:   3'- caUGGUuGCGu--UGaUAGGCGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 13694 0.67 0.882772
Target:  5'- -gGCCGgcuucuguucGCGCGGCgcggGUUCGgUCGGCGc -3'
miRNA:   3'- caUGGU----------UGCGUUGa---UAGGCgAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 13799 0.71 0.665128
Target:  5'- -cGCCGGCGCGGCUucAUCgGCgggAGCGg -3'
miRNA:   3'- caUGGUUGCGUUGA--UAGgCGag-UCGC- -5'
23860 5' -51.6 NC_005262.1 + 13826 0.66 0.911301
Target:  5'- -gAUCGAUGCAAUUGaCCauGUUCGGCGa -3'
miRNA:   3'- caUGGUUGCGUUGAUaGG--CGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 15327 0.77 0.320809
Target:  5'- cGUGCCcACGCGGCUcgcgAUCCGCgCGGCa -3'
miRNA:   3'- -CAUGGuUGCGUUGA----UAGGCGaGUCGc -5'
23860 5' -51.6 NC_005262.1 + 15491 0.66 0.917728
Target:  5'- -cACCgAGCGCGGCggcUCGCUCAccgGCGa -3'
miRNA:   3'- caUGG-UUGCGUUGauaGGCGAGU---CGC- -5'
23860 5' -51.6 NC_005262.1 + 15871 0.66 0.911301
Target:  5'- uGUACCucGACGCGAUggcgcugAUCCGCcgCGuGCGc -3'
miRNA:   3'- -CAUGG--UUGCGUUGa------UAGGCGa-GU-CGC- -5'
23860 5' -51.6 NC_005262.1 + 17139 0.74 0.478243
Target:  5'- gGUGCCGGCGCcauGCUG-CCGCugucggccaUCAGCGu -3'
miRNA:   3'- -CAUGGUUGCGu--UGAUaGGCG---------AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 17339 0.69 0.752704
Target:  5'- -gGCCGGCGCGGCauucggGUCCGgCgcgggCGGCGc -3'
miRNA:   3'- caUGGUUGCGUUGa-----UAGGC-Ga----GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 18564 0.68 0.80367
Target:  5'- -gACCuuCGCGACg--CCGUUCAGgGc -3'
miRNA:   3'- caUGGuuGCGUUGauaGGCGAGUCgC- -5'
23860 5' -51.6 NC_005262.1 + 19230 0.68 0.80367
Target:  5'- -aGCCAGgGCGugUAcUCCGCguucaGGCGg -3'
miRNA:   3'- caUGGUUgCGUugAU-AGGCGag---UCGC- -5'
23860 5' -51.6 NC_005262.1 + 22933 0.66 0.897594
Target:  5'- -cGCCGACGCcAUgcUCCGCgCGGgGa -3'
miRNA:   3'- caUGGUUGCGuUGauAGGCGaGUCgC- -5'
23860 5' -51.6 NC_005262.1 + 23391 0.72 0.586551
Target:  5'- -cGCCGACGCGcgGCUgaAUCCGCgcgaacgCGGCa -3'
miRNA:   3'- caUGGUUGCGU--UGA--UAGGCGa------GUCGc -5'
23860 5' -51.6 NC_005262.1 + 24630 0.67 0.849962
Target:  5'- uUGCCAGCGCGcuucaGCgaaCCGCUgaCAGCu -3'
miRNA:   3'- cAUGGUUGCGU-----UGauaGGCGA--GUCGc -5'
23860 5' -51.6 NC_005262.1 + 27572 0.68 0.833008
Target:  5'- -cGCC-GCGCAGCgcgagaagccugccaAUCCGCUCgacAGCGa -3'
miRNA:   3'- caUGGuUGCGUUGa--------------UAGGCGAG---UCGC- -5'
23860 5' -51.6 NC_005262.1 + 28163 0.67 0.874955
Target:  5'- -cGCgCGGCGCAACUG--CGCgCGGCGg -3'
miRNA:   3'- caUG-GUUGCGUUGAUagGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 29914 0.68 0.841142
Target:  5'- -gGgCGAUGCGACca--CGCUCGGCGa -3'
miRNA:   3'- caUgGUUGCGUUGauagGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 30924 0.71 0.63143
Target:  5'- --uUCGACGCGGCgaa-CGCUCGGCGc -3'
miRNA:   3'- cauGGUUGCGUUGauagGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 31266 0.68 0.813347
Target:  5'- -cGCCcgAAgGCGGCccGUCCGgUCAGCGg -3'
miRNA:   3'- caUGG--UUgCGUUGa-UAGGCgAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 33515 0.66 0.917728
Target:  5'- ---aCAGCGCGcucgAUUGcCCGCUCGGCc -3'
miRNA:   3'- caugGUUGCGU----UGAUaGGCGAGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.