miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23860 5' -51.6 NC_005262.1 + 1047 0.68 0.822825
Target:  5'- cGUGCCGAaugcUGCGgcGCUGaCCGC-CAGCGc -3'
miRNA:   3'- -CAUGGUU----GCGU--UGAUaGGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 1485 0.66 0.916466
Target:  5'- cUGCCGGCGCugccGCUgcAUCUGCggagggaggcugCGGCGg -3'
miRNA:   3'- cAUGGUUGCGu---UGA--UAGGCGa-----------GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 2165 0.67 0.849962
Target:  5'- -cAUCAGCGCGGCUAUugUCGgaCGGCu -3'
miRNA:   3'- caUGGUUGCGUUGAUA--GGCgaGUCGc -5'
23860 5' -51.6 NC_005262.1 + 2653 0.68 0.793806
Target:  5'- aUGCCuGCGCGGCg--CCGggCGGCGu -3'
miRNA:   3'- cAUGGuUGCGUUGauaGGCgaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 2980 0.71 0.676312
Target:  5'- -gGCCGGCGCAAac-UCUGCgaCAGCGg -3'
miRNA:   3'- caUGGUUGCGUUgauAGGCGa-GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 3156 0.73 0.531403
Target:  5'- uUGCCcGCGguGCUcgCCGCUCgccAGCGu -3'
miRNA:   3'- cAUGGuUGCguUGAuaGGCGAG---UCGC- -5'
23860 5' -51.6 NC_005262.1 + 4575 0.69 0.77356
Target:  5'- -cGCCAGCgGCGGCg--CUGCUCGGgCGu -3'
miRNA:   3'- caUGGUUG-CGUUGauaGGCGAGUC-GC- -5'
23860 5' -51.6 NC_005262.1 + 4754 0.7 0.687451
Target:  5'- cUGCCGGCGCcACggAUCacugaGCUCAGCc -3'
miRNA:   3'- cAUGGUUGCGuUGa-UAGg----CGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 5126 0.74 0.499214
Target:  5'- cUGCCAuGCGCGACgggcggcgcugAUCCuGCUCGGCGc -3'
miRNA:   3'- cAUGGU-UGCGUUGa----------UAGG-CGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 6351 0.67 0.866877
Target:  5'- -cGCCGcCGCGGC-AUCCGCggaCGGUGc -3'
miRNA:   3'- caUGGUuGCGUUGaUAGGCGa--GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 6725 0.68 0.813347
Target:  5'- -cGCCGAucuCGCcg--AUCUGCUCGGCGg -3'
miRNA:   3'- caUGGUU---GCGuugaUAGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 7648 0.68 0.822825
Target:  5'- -cGCCGGCGgcgaCGGCUAucUCCGCgagCGGCa -3'
miRNA:   3'- caUGGUUGC----GUUGAU--AGGCGa--GUCGc -5'
23860 5' -51.6 NC_005262.1 + 7703 0.66 0.904589
Target:  5'- -cGCCGccuccucgaGCuGCAucuugcGCUGaCCGCUCAGCGu -3'
miRNA:   3'- caUGGU---------UG-CGU------UGAUaGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 10400 0.66 0.917728
Target:  5'- cGUGCCGGCGUuguccuugAACgcgGUCUGCggcaGGCGc -3'
miRNA:   3'- -CAUGGUUGCG--------UUGa--UAGGCGag--UCGC- -5'
23860 5' -51.6 NC_005262.1 + 10547 0.77 0.337177
Target:  5'- aUGCCGACGCGACcggCCGCgcgCAGCc -3'
miRNA:   3'- cAUGGUUGCGUUGauaGGCGa--GUCGc -5'
23860 5' -51.6 NC_005262.1 + 10826 0.68 0.80367
Target:  5'- -gACCAGCGCAuGCgcGUCCGCcgcgcUCAGgGg -3'
miRNA:   3'- caUGGUUGCGU-UGa-UAGGCG-----AGUCgC- -5'
23860 5' -51.6 NC_005262.1 + 11523 0.67 0.858543
Target:  5'- uGUGCCugaacAUGCGACUcggCCGCUCGcCGg -3'
miRNA:   3'- -CAUGGu----UGCGUUGAua-GGCGAGUcGC- -5'
23860 5' -51.6 NC_005262.1 + 11891 0.7 0.709552
Target:  5'- uUGCCGGCGaAGCggucgGUgCCGUUCGGCGg -3'
miRNA:   3'- cAUGGUUGCgUUGa----UA-GGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 12843 0.66 0.897594
Target:  5'- -gGCCuGCGuCGGCU-UCaGCUCGGCGg -3'
miRNA:   3'- caUGGuUGC-GUUGAuAGgCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 12949 0.71 0.671843
Target:  5'- -gGCguGCGCGACggcaucgccgaCCGCUCGGCGu -3'
miRNA:   3'- caUGguUGCGUUGaua--------GGCGAGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.