miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23860 5' -51.6 NC_005262.1 + 29914 0.68 0.841142
Target:  5'- -gGgCGAUGCGACca--CGCUCGGCGa -3'
miRNA:   3'- caUgGUUGCGUUGauagGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 4575 0.69 0.77356
Target:  5'- -cGCCAGCgGCGGCg--CUGCUCGGgCGu -3'
miRNA:   3'- caUGGUUG-CGUUGauaGGCGAGUC-GC- -5'
23860 5' -51.6 NC_005262.1 + 2653 0.68 0.793806
Target:  5'- aUGCCuGCGCGGCg--CCGggCGGCGu -3'
miRNA:   3'- cAUGGuUGCGUUGauaGGCgaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 10826 0.68 0.80367
Target:  5'- -gACCAGCGCAuGCgcGUCCGCcgcgcUCAGgGg -3'
miRNA:   3'- caUGGUUGCGU-UGa-UAGGCG-----AGUCgC- -5'
23860 5' -51.6 NC_005262.1 + 18564 0.68 0.80367
Target:  5'- -gACCuuCGCGACg--CCGUUCAGgGc -3'
miRNA:   3'- caUGGuuGCGUUGauaGGCGAGUCgC- -5'
23860 5' -51.6 NC_005262.1 + 19230 0.68 0.80367
Target:  5'- -aGCCAGgGCGugUAcUCCGCguucaGGCGg -3'
miRNA:   3'- caUGGUUgCGUugAU-AGGCGag---UCGC- -5'
23860 5' -51.6 NC_005262.1 + 7648 0.68 0.822825
Target:  5'- -cGCCGGCGgcgaCGGCUAucUCCGCgagCGGCa -3'
miRNA:   3'- caUGGUUGC----GUUGAU--AGGCGa--GUCGc -5'
23860 5' -51.6 NC_005262.1 + 27572 0.68 0.833008
Target:  5'- -cGCC-GCGCAGCgcgagaagccugccaAUCCGCUCgacAGCGa -3'
miRNA:   3'- caUGGuUGCGUUGa--------------UAGGCGAG---UCGC- -5'
23860 5' -51.6 NC_005262.1 + 13562 0.68 0.841142
Target:  5'- -gACCGuUGCuugGC-AUCCGCUCGGCu -3'
miRNA:   3'- caUGGUuGCGu--UGaUAGGCGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 46539 0.69 0.752704
Target:  5'- --cCCAGCGCGGCgccggccgCCGCUCccGCGa -3'
miRNA:   3'- cauGGUUGCGUUGaua-----GGCGAGu-CGC- -5'
23860 5' -51.6 NC_005262.1 + 4754 0.7 0.687451
Target:  5'- cUGCCGGCGCcACggAUCacugaGCUCAGCc -3'
miRNA:   3'- cAUGGUUGCGuUGa-UAGg----CGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 12949 0.71 0.671843
Target:  5'- -gGCguGCGCGACggcaucgccgaCCGCUCGGCGu -3'
miRNA:   3'- caUGguUGCGUUGaua--------GGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 34762 0.76 0.389852
Target:  5'- cGUGCCGGCGCcGCUcga-GCUCGGCGg -3'
miRNA:   3'- -CAUGGUUGCGuUGAuaggCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 5126 0.74 0.499214
Target:  5'- cUGCCAuGCGCGACgggcggcgcugAUCCuGCUCGGCGc -3'
miRNA:   3'- cAUGGU-UGCGUUGa----------UAGG-CGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 44982 0.73 0.542302
Target:  5'- -gGCCGACguGCAGCaGUCCGCgCGGCa -3'
miRNA:   3'- caUGGUUG--CGUUGaUAGGCGaGUCGc -5'
23860 5' -51.6 NC_005262.1 + 54459 0.72 0.575407
Target:  5'- aGUAUCAGCGCAACgucgaggcgCUGCUC-GCGg -3'
miRNA:   3'- -CAUGGUUGCGUUGaua------GGCGAGuCGC- -5'
23860 5' -51.6 NC_005262.1 + 49392 0.72 0.586551
Target:  5'- -cACCGcgggcguCGCAACUgGUCUGUUCGGCGg -3'
miRNA:   3'- caUGGUu------GCGUUGA-UAGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 53069 0.72 0.607826
Target:  5'- -gACCGGCGCGAUcgcgaagcugcugUAUCCGCagAGCa -3'
miRNA:   3'- caUGGUUGCGUUG-------------AUAGGCGagUCGc -5'
23860 5' -51.6 NC_005262.1 + 50385 0.71 0.63143
Target:  5'- -gACCGugGCGACgcgaaCCGCgCGGCGa -3'
miRNA:   3'- caUGGUugCGUUGaua--GGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 33635 0.71 0.665128
Target:  5'- -cGCCGGCGCAGgUGUCCGa--GGCu -3'
miRNA:   3'- caUGGUUGCGUUgAUAGGCgagUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.