miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23860 5' -51.6 NC_005262.1 + 33515 0.66 0.917728
Target:  5'- ---aCAGCGCGcucgAUUGcCCGCUCGGCc -3'
miRNA:   3'- caugGUUGCGU----UGAUaGGCGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 31266 0.68 0.813347
Target:  5'- -cGCCcgAAgGCGGCccGUCCGgUCAGCGg -3'
miRNA:   3'- caUGG--UUgCGUUGa-UAGGCgAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 52360 0.68 0.80367
Target:  5'- -cGCgGGCGCGGCgUGUCgCGCaccuUCGGCGg -3'
miRNA:   3'- caUGgUUGCGUUG-AUAG-GCG----AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 62538 1.08 0.002989
Target:  5'- gGUACCAACGCAACUAUCCGCUCAGCGc -3'
miRNA:   3'- -CAUGGUUGCGUUGAUAGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 52392 0.66 0.897594
Target:  5'- --cCCGGCGCGGCg--CgGCuUCGGCGu -3'
miRNA:   3'- cauGGUUGCGUUGauaGgCG-AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 12843 0.66 0.897594
Target:  5'- -gGCCuGCGuCGGCU-UCaGCUCGGCGg -3'
miRNA:   3'- caUGGuUGC-GUUGAuAGgCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 50651 0.66 0.89032
Target:  5'- uGUGCC-GCGCAGCg---CGCgCGGCGg -3'
miRNA:   3'- -CAUGGuUGCGUUGauagGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 40291 0.67 0.882772
Target:  5'- cUGCUGGCGCAGC--UCCucggGCgUCAGCGg -3'
miRNA:   3'- cAUGGUUGCGUUGauAGG----CG-AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 46243 0.67 0.866877
Target:  5'- -cGCCGcCGCGGCUG-CCGcCUCGcGCGc -3'
miRNA:   3'- caUGGUuGCGUUGAUaGGC-GAGU-CGC- -5'
23860 5' -51.6 NC_005262.1 + 1047 0.68 0.822825
Target:  5'- cGUGCCGAaugcUGCGgcGCUGaCCGC-CAGCGc -3'
miRNA:   3'- -CAUGGUU----GCGU--UGAUaGGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 42050 0.67 0.858543
Target:  5'- cGUGCCGcuGCGCGAUcuUCCGUg-AGCGc -3'
miRNA:   3'- -CAUGGU--UGCGUUGauAGGCGagUCGC- -5'
23860 5' -51.6 NC_005262.1 + 37885 0.67 0.874955
Target:  5'- cGUGgCGACGUAccauGCgcgCUGCUCGGCa -3'
miRNA:   3'- -CAUgGUUGCGU----UGauaGGCGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 10400 0.66 0.917728
Target:  5'- cGUGCCGGCGUuguccuugAACgcgGUCUGCggcaGGCGc -3'
miRNA:   3'- -CAUGGUUGCG--------UUGa--UAGGCGag--UCGC- -5'
23860 5' -51.6 NC_005262.1 + 58771 0.67 0.849962
Target:  5'- -gGCCGGCgaGCAACUG-CCGCUggaGGCa -3'
miRNA:   3'- caUGGUUG--CGUUGAUaGGCGAg--UCGc -5'
23860 5' -51.6 NC_005262.1 + 37241 0.66 0.917728
Target:  5'- -aACUGGCGCAGCgcgucggCCGCUUcggAGUGg -3'
miRNA:   3'- caUGGUUGCGUUGaua----GGCGAG---UCGC- -5'
23860 5' -51.6 NC_005262.1 + 13694 0.67 0.882772
Target:  5'- -gGCCGgcuucuguucGCGCGGCgcggGUUCGgUCGGCGc -3'
miRNA:   3'- caUGGU----------UGCGUUGa---UAGGCgAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 24630 0.67 0.849962
Target:  5'- uUGCCAGCGCGcuucaGCgaaCCGCUgaCAGCu -3'
miRNA:   3'- cAUGGUUGCGU-----UGauaGGCGA--GUCGc -5'
23860 5' -51.6 NC_005262.1 + 6725 0.68 0.813347
Target:  5'- -cGCCGAucuCGCcg--AUCUGCUCGGCGg -3'
miRNA:   3'- caUGGUU---GCGuugaUAGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 62172 0.66 0.911301
Target:  5'- -gACCuACGCGAUUAucgaUCUGCUCAaCGa -3'
miRNA:   3'- caUGGuUGCGUUGAU----AGGCGAGUcGC- -5'
23860 5' -51.6 NC_005262.1 + 62817 0.66 0.89032
Target:  5'- -cGCCcGCGCAGgUcgCCaCUCGGCa -3'
miRNA:   3'- caUGGuUGCGUUgAuaGGcGAGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.