miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23860 5' -51.6 NC_005262.1 + 62538 1.08 0.002989
Target:  5'- gGUACCAACGCAACUAUCCGCUCAGCGc -3'
miRNA:   3'- -CAUGGUUGCGUUGAUAGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 15327 0.77 0.320809
Target:  5'- cGUGCCcACGCGGCUcgcgAUCCGCgCGGCa -3'
miRNA:   3'- -CAUGGuUGCGUUGA----UAGGCGaGUCGc -5'
23860 5' -51.6 NC_005262.1 + 10547 0.77 0.337177
Target:  5'- aUGCCGACGCGACcggCCGCgcgCAGCc -3'
miRNA:   3'- cAUGGUUGCGUUGauaGGCGa--GUCGc -5'
23860 5' -51.6 NC_005262.1 + 52555 0.76 0.389852
Target:  5'- gGUGCgCAGCGCGaucgucGCUGUCgaGCUCGGCGc -3'
miRNA:   3'- -CAUG-GUUGCGU------UGAUAGg-CGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 34762 0.76 0.389852
Target:  5'- cGUGCCGGCGCcGCUcga-GCUCGGCGg -3'
miRNA:   3'- -CAUGGUUGCGuUGAuaggCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 51670 0.75 0.418134
Target:  5'- --uCCAGCGCGGCgAUCUGCUCGcGCGc -3'
miRNA:   3'- cauGGUUGCGUUGaUAGGCGAGU-CGC- -5'
23860 5' -51.6 NC_005262.1 + 17139 0.74 0.478243
Target:  5'- gGUGCCGGCGCcauGCUG-CCGCugucggccaUCAGCGu -3'
miRNA:   3'- -CAUGGUUGCGu--UGAUaGGCG---------AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 5126 0.74 0.499214
Target:  5'- cUGCCAuGCGCGACgggcggcgcugAUCCuGCUCGGCGc -3'
miRNA:   3'- cAUGGU-UGCGUUGa----------UAGG-CGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 3156 0.73 0.531403
Target:  5'- uUGCCcGCGguGCUcgCCGCUCgccAGCGu -3'
miRNA:   3'- cAUGGuUGCguUGAuaGGCGAG---UCGC- -5'
23860 5' -51.6 NC_005262.1 + 39586 0.73 0.540116
Target:  5'- cGUGCCGGCGCAGCgucgcggcugCCGcCUCGGgCGu -3'
miRNA:   3'- -CAUGGUUGCGUUGaua-------GGC-GAGUC-GC- -5'
23860 5' -51.6 NC_005262.1 + 44982 0.73 0.542302
Target:  5'- -gGCCGACguGCAGCaGUCCGCgCGGCa -3'
miRNA:   3'- caUGGUUG--CGUUGaUAGGCGaGUCGc -5'
23860 5' -51.6 NC_005262.1 + 54459 0.72 0.575407
Target:  5'- aGUAUCAGCGCAACgucgaggcgCUGCUC-GCGg -3'
miRNA:   3'- -CAUGGUUGCGUUGaua------GGCGAGuCGC- -5'
23860 5' -51.6 NC_005262.1 + 42111 0.72 0.575407
Target:  5'- cGUACagCAGCGCGGCgccgCCGCUCAGg- -3'
miRNA:   3'- -CAUG--GUUGCGUUGaua-GGCGAGUCgc -5'
23860 5' -51.6 NC_005262.1 + 49392 0.72 0.586551
Target:  5'- -cACCGcgggcguCGCAACUgGUCUGUUCGGCGg -3'
miRNA:   3'- caUGGUu------GCGUUGA-UAGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 23391 0.72 0.586551
Target:  5'- -cGCCGACGCGcgGCUgaAUCCGCgcgaacgCGGCa -3'
miRNA:   3'- caUGGUUGCGU--UGA--UAGGCGa------GUCGc -5'
23860 5' -51.6 NC_005262.1 + 53069 0.72 0.607826
Target:  5'- -gACCGGCGCGAUcgcgaagcugcugUAUCCGCagAGCa -3'
miRNA:   3'- caUGGUUGCGUUG-------------AUAGGCGagUCGc -5'
23860 5' -51.6 NC_005262.1 + 30924 0.71 0.63143
Target:  5'- --uUCGACGCGGCgaa-CGCUCGGCGc -3'
miRNA:   3'- cauGGUUGCGUUGauagGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 50385 0.71 0.63143
Target:  5'- -gACCGugGCGACgcgaaCCGCgCGGCGa -3'
miRNA:   3'- caUGGUugCGUUGaua--GGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 33635 0.71 0.665128
Target:  5'- -cGCCGGCGCAGgUGUCCGa--GGCu -3'
miRNA:   3'- caUGGUUGCGUUgAUAGGCgagUCGc -5'
23860 5' -51.6 NC_005262.1 + 13799 0.71 0.665128
Target:  5'- -cGCCGGCGCGGCUucAUCgGCgggAGCGg -3'
miRNA:   3'- caUGGUUGCGUUGA--UAGgCGag-UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.