miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23860 5' -51.6 NC_005262.1 + 12949 0.71 0.671843
Target:  5'- -gGCguGCGCGACggcaucgccgaCCGCUCGGCGu -3'
miRNA:   3'- caUGguUGCGUUGaua--------GGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 48086 0.71 0.675195
Target:  5'- -cGCCAcgucgagcgcauaGCGCuGCUcGUCCGuCUCGGCGa -3'
miRNA:   3'- caUGGU-------------UGCGuUGA-UAGGC-GAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 2980 0.71 0.676312
Target:  5'- -gGCCGGCGCAAac-UCUGCgaCAGCGg -3'
miRNA:   3'- caUGGUUGCGUUgauAGGCGa-GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 4754 0.7 0.687451
Target:  5'- cUGCCGGCGCcACggAUCacugaGCUCAGCc -3'
miRNA:   3'- cAUGGUUGCGuUGa-UAGg----CGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 11891 0.7 0.709552
Target:  5'- uUGCCGGCGaAGCggucgGUgCCGUUCGGCGg -3'
miRNA:   3'- cAUGGUUGCgUUGa----UA-GGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 47435 0.7 0.731336
Target:  5'- uUGCCgAACGCGGCggcgCCGaUCAGCGc -3'
miRNA:   3'- cAUGG-UUGCGUUGaua-GGCgAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 46539 0.69 0.752704
Target:  5'- --cCCAGCGCGGCgccggccgCCGCUCccGCGa -3'
miRNA:   3'- cauGGUUGCGUUGaua-----GGCGAGu-CGC- -5'
23860 5' -51.6 NC_005262.1 + 17339 0.69 0.752704
Target:  5'- -gGCCGGCGCGGCauucggGUCCGgCgcgggCGGCGc -3'
miRNA:   3'- caUGGUUGCGUUGa-----UAGGC-Ga----GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 4575 0.69 0.77356
Target:  5'- -cGCCAGCgGCGGCg--CUGCUCGGgCGu -3'
miRNA:   3'- caUGGUUG-CGUUGauaGGCGAGUC-GC- -5'
23860 5' -51.6 NC_005262.1 + 39080 0.69 0.78072
Target:  5'- -cGCCAGCGCGAUcagcuccucgguggUGUCCGCgaUCAuGUGg -3'
miRNA:   3'- caUGGUUGCGUUG--------------AUAGGCG--AGU-CGC- -5'
23860 5' -51.6 NC_005262.1 + 2653 0.68 0.793806
Target:  5'- aUGCCuGCGCGGCg--CCGggCGGCGu -3'
miRNA:   3'- cAUGGuUGCGUUGauaGGCgaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 43304 0.68 0.797773
Target:  5'- -cGCCGauggugcgcgcgauuACGC-ACUcgCCGCUCuGCGg -3'
miRNA:   3'- caUGGU---------------UGCGuUGAuaGGCGAGuCGC- -5'
23860 5' -51.6 NC_005262.1 + 52360 0.68 0.80367
Target:  5'- -cGCgGGCGCGGCgUGUCgCGCaccuUCGGCGg -3'
miRNA:   3'- caUGgUUGCGUUG-AUAG-GCG----AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 10826 0.68 0.80367
Target:  5'- -gACCAGCGCAuGCgcGUCCGCcgcgcUCAGgGg -3'
miRNA:   3'- caUGGUUGCGU-UGa-UAGGCG-----AGUCgC- -5'
23860 5' -51.6 NC_005262.1 + 18564 0.68 0.80367
Target:  5'- -gACCuuCGCGACg--CCGUUCAGgGc -3'
miRNA:   3'- caUGGuuGCGUUGauaGGCGAGUCgC- -5'
23860 5' -51.6 NC_005262.1 + 19230 0.68 0.80367
Target:  5'- -aGCCAGgGCGugUAcUCCGCguucaGGCGg -3'
miRNA:   3'- caUGGUUgCGUugAU-AGGCGag---UCGC- -5'
23860 5' -51.6 NC_005262.1 + 31266 0.68 0.813347
Target:  5'- -cGCCcgAAgGCGGCccGUCCGgUCAGCGg -3'
miRNA:   3'- caUGG--UUgCGUUGa-UAGGCgAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 6725 0.68 0.813347
Target:  5'- -cGCCGAucuCGCcg--AUCUGCUCGGCGg -3'
miRNA:   3'- caUGGUU---GCGuugaUAGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 1047 0.68 0.822825
Target:  5'- cGUGCCGAaugcUGCGgcGCUGaCCGC-CAGCGc -3'
miRNA:   3'- -CAUGGUU----GCGU--UGAUaGGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 7648 0.68 0.822825
Target:  5'- -cGCCGGCGgcgaCGGCUAucUCCGCgagCGGCa -3'
miRNA:   3'- caUGGUUGC----GUUGAU--AGGCGa--GUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.