miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23860 5' -51.6 NC_005262.1 + 62817 0.66 0.89032
Target:  5'- -cGCCcGCGCAGgUcgCCaCUCGGCa -3'
miRNA:   3'- caUGGuUGCGUUgAuaGGcGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 62538 1.08 0.002989
Target:  5'- gGUACCAACGCAACUAUCCGCUCAGCGc -3'
miRNA:   3'- -CAUGGUUGCGUUGAUAGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 62172 0.66 0.911301
Target:  5'- -gACCuACGCGAUUAucgaUCUGCUCAaCGa -3'
miRNA:   3'- caUGGuUGCGUUGAU----AGGCGAGUcGC- -5'
23860 5' -51.6 NC_005262.1 + 61700 0.67 0.858543
Target:  5'- -gAUCAggGCGCGcCggGUUCGCUCGGCGc -3'
miRNA:   3'- caUGGU--UGCGUuGa-UAGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 61145 0.66 0.917728
Target:  5'- -cGCUGGCGCAGCagaUCGCggCGGCGg -3'
miRNA:   3'- caUGGUUGCGUUGauaGGCGa-GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 58771 0.67 0.849962
Target:  5'- -gGCCGGCgaGCAACUG-CCGCUggaGGCa -3'
miRNA:   3'- caUGGUUG--CGUUGAUaGGCGAg--UCGc -5'
23860 5' -51.6 NC_005262.1 + 57269 0.67 0.849962
Target:  5'- -aACCAgcucGCGCAGCUcacggcCCGCgugCAGCa -3'
miRNA:   3'- caUGGU----UGCGUUGAua----GGCGa--GUCGc -5'
23860 5' -51.6 NC_005262.1 + 54459 0.72 0.575407
Target:  5'- aGUAUCAGCGCAACgucgaggcgCUGCUC-GCGg -3'
miRNA:   3'- -CAUGGUUGCGUUGaua------GGCGAGuCGC- -5'
23860 5' -51.6 NC_005262.1 + 53841 0.67 0.867696
Target:  5'- -cACCGGCGCGGCgcggacggcaagcagAUCgCGCUCAaGCc -3'
miRNA:   3'- caUGGUUGCGUUGa--------------UAG-GCGAGU-CGc -5'
23860 5' -51.6 NC_005262.1 + 53069 0.72 0.607826
Target:  5'- -gACCGGCGCGAUcgcgaagcugcugUAUCCGCagAGCa -3'
miRNA:   3'- caUGGUUGCGUUG-------------AUAGGCGagUCGc -5'
23860 5' -51.6 NC_005262.1 + 52904 0.66 0.91583
Target:  5'- -cACCAGCGagGGCgugAUCCGCUCGaucuacgacggccuGCGc -3'
miRNA:   3'- caUGGUUGCg-UUGa--UAGGCGAGU--------------CGC- -5'
23860 5' -51.6 NC_005262.1 + 52555 0.76 0.389852
Target:  5'- gGUGCgCAGCGCGaucgucGCUGUCgaGCUCGGCGc -3'
miRNA:   3'- -CAUG-GUUGCGU------UGAUAGg-CGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 52392 0.66 0.897594
Target:  5'- --cCCGGCGCGGCg--CgGCuUCGGCGu -3'
miRNA:   3'- cauGGUUGCGUUGauaGgCG-AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 52360 0.68 0.80367
Target:  5'- -cGCgGGCGCGGCgUGUCgCGCaccuUCGGCGg -3'
miRNA:   3'- caUGgUUGCGUUG-AUAG-GCG----AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 51781 0.67 0.858543
Target:  5'- -gACCGAUGCGcagguccagGCUGUcacguaCCGCcUCGGCGa -3'
miRNA:   3'- caUGGUUGCGU---------UGAUA------GGCG-AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 51670 0.75 0.418134
Target:  5'- --uCCAGCGCGGCgAUCUGCUCGcGCGc -3'
miRNA:   3'- cauGGUUGCGUUGaUAGGCGAGU-CGC- -5'
23860 5' -51.6 NC_005262.1 + 50873 0.67 0.849962
Target:  5'- gGUGCCGACGCAA----UCGCaCGGCGc -3'
miRNA:   3'- -CAUGGUUGCGUUgauaGGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 50651 0.66 0.89032
Target:  5'- uGUGCC-GCGCAGCg---CGCgCGGCGg -3'
miRNA:   3'- -CAUGGuUGCGUUGauagGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 50385 0.71 0.63143
Target:  5'- -gACCGugGCGACgcgaaCCGCgCGGCGa -3'
miRNA:   3'- caUGGUugCGUUGaua--GGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 49392 0.72 0.586551
Target:  5'- -cACCGcgggcguCGCAACUgGUCUGUUCGGCGg -3'
miRNA:   3'- caUGGUu------GCGUUGA-UAGGCGAGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.