miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 3' -59.5 NC_005262.1 + 17269 0.68 0.396172
Target:  5'- gCGCCgCGCUgGGcugcuGCGCGGGCAggGg -3'
miRNA:   3'- -GCGGgGCGAgCUuc---CGUGCCCGUuaC- -5'
23862 3' -59.5 NC_005262.1 + 19112 0.73 0.196249
Target:  5'- uGCCaCGUUCGGaucGGGCGCGGGCGc-- -3'
miRNA:   3'- gCGGgGCGAGCU---UCCGUGCCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 23069 0.67 0.460651
Target:  5'- cCGCCCgUGCUCGAGGGCgucaGCGccgccguauuauGGCcGUGc -3'
miRNA:   3'- -GCGGG-GCGAGCUUCCG----UGC------------CCGuUAC- -5'
23862 3' -59.5 NC_005262.1 + 27386 0.67 0.460651
Target:  5'- gCGCCuCCGCgaacgUGGAcuucGGCgACGGGCGAa- -3'
miRNA:   3'- -GCGG-GGCGa----GCUU----CCG-UGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 29032 0.69 0.345748
Target:  5'- cCGCCgaGCUCGAGcGGCGCcGGCAc-- -3'
miRNA:   3'- -GCGGggCGAGCUU-CCGUGcCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 30256 0.68 0.396172
Target:  5'- aGCCa-GCUCGAcgaccugaacaAGGCcgaGCGGGCAAUc -3'
miRNA:   3'- gCGGggCGAGCU-----------UCCG---UGCCCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 31997 0.67 0.480077
Target:  5'- gGCCCCGCUCGucaucgagAAGGCcguggaaaaGGccGCGAUGa -3'
miRNA:   3'- gCGGGGCGAGC--------UUCCGug-------CC--CGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 33930 0.7 0.307369
Target:  5'- uGCCgaGCUCGcggcGGGCACGcGGCAAg- -3'
miRNA:   3'- gCGGggCGAGCu---UCCGUGC-CCGUUac -5'
23862 3' -59.5 NC_005262.1 + 35548 0.66 0.520065
Target:  5'- aGCCgcgaugUCGCUCGccGGCGCGGGaaaGAg- -3'
miRNA:   3'- gCGG------GGCGAGCuuCCGUGCCCg--UUac -5'
23862 3' -59.5 NC_005262.1 + 36267 0.67 0.470313
Target:  5'- uCGCCCuCG-UCGguGcGCGCGGGCAc-- -3'
miRNA:   3'- -GCGGG-GCgAGCuuC-CGUGCCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 37875 0.75 0.155065
Target:  5'- uCGgCgCGCcCGGAGGCACGGGCGGg- -3'
miRNA:   3'- -GCgGgGCGaGCUUCCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 41639 0.66 0.540548
Target:  5'- uCGCCuCCaGCUCGgcGauGCGGGCAGc- -3'
miRNA:   3'- -GCGG-GG-CGAGCuuCcgUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 42256 0.73 0.211972
Target:  5'- gCGCCgCGCUcacugcggcgaCGAGcGGCACGGGCAccGg -3'
miRNA:   3'- -GCGGgGCGA-----------GCUU-CCGUGCCCGUuaC- -5'
23862 3' -59.5 NC_005262.1 + 43978 0.75 0.147043
Target:  5'- gGCUCUGCgcgUGAucGCGCGGGCGAUGg -3'
miRNA:   3'- gCGGGGCGa--GCUucCGUGCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 45448 0.67 0.451095
Target:  5'- gGCUCgGaaccaUCGccGGCGCGGGCAucAUGg -3'
miRNA:   3'- gCGGGgCg----AGCuuCCGUGCCCGU--UAC- -5'
23862 3' -59.5 NC_005262.1 + 45970 0.71 0.252894
Target:  5'- -uUCCCGCUCGAGGGUugGGaCGAc- -3'
miRNA:   3'- gcGGGGCGAGCUUCCGugCCcGUUac -5'
23862 3' -59.5 NC_005262.1 + 46810 0.67 0.470313
Target:  5'- gCGCUCgGC-CGgcGGCAgcaGGGCAAUa -3'
miRNA:   3'- -GCGGGgCGaGCuuCCGUg--CCCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 46980 0.67 0.441649
Target:  5'- uCGgCCUGUgggCGAAGGCAUGGcGCGc-- -3'
miRNA:   3'- -GCgGGGCGa--GCUUCCGUGCC-CGUuac -5'
23862 3' -59.5 NC_005262.1 + 48463 0.71 0.271667
Target:  5'- uGCCgCGCggaucgCGAgccgcguGGGCACGGGCGGc- -3'
miRNA:   3'- gCGGgGCGa-----GCU-------UCCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 49410 0.7 0.292956
Target:  5'- uGgUCUGUUCGgcGGCAUGGGCGAc- -3'
miRNA:   3'- gCgGGGCGAGCuuCCGUGCCCGUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.